Conservation of cofitness between ECD_00008 and ECD_01250 in Escherichia coli BL21

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00008 transaldolase B 1.0 ECD_01250 DNA topoisomerase I, omega subunit low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03652 Transaldolase 1.00 OHPLBJKB_02410 DNA topoisomerase 1 low > 73
Escherichia coli ECOR27 1.00 NOLOHH_03410 transaldolase B 1.00 NOLOHH_20270 type I DNA topoisomerase — —
Escherichia coli ECRC102 1.00 NIAGMN_08930 transaldolase B 1.00 NIAGMN_26775 type I DNA topoisomerase — —
Escherichia coli ECRC100 1.00 OKFHMN_11080 transaldolase B 1.00 OKFHMN_02605 type I DNA topoisomerase — —
Escherichia coli ECRC62 1.00 BNILDI_08195 transaldolase B 1.00 BNILDI_18420 type I DNA topoisomerase low > 75
Escherichia coli BW25113 1.00 b0008 talB transaldolase B (NCBI) 1.00 b1274 topA DNA topoisomerase I (NCBI) — —
Escherichia coli ECRC99 1.00 KEDOAH_17075 transaldolase B 1.00 KEDOAH_26160 type I DNA topoisomerase — —
Escherichia coli ECRC101 1.00 MCAODC_01595 transaldolase B 1.00 MCAODC_15660 type I DNA topoisomerase — —
Escherichia coli ECRC98 1.00 JDDGAC_14675 transaldolase B 1.00 JDDGAC_05150 type I DNA topoisomerase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS00045 transaldolase 1.00 ECOLIN_RS07675 type I DNA topoisomerase — —
Escherichia coli ECOR38 1.00 HEPCGN_09085 transaldolase B 1.00 HEPCGN_25595 type I DNA topoisomerase low > 87
Escherichia fergusonii Becca 1.00 EFB2_04035 Transaldolase B 1.00 EFB2_02653 DNA topoisomerase 1 low > 86
Klebsiella michiganensis M5al 0.96 BWI76_RS04270 transaldolase 0.94 BWI76_RS11925 DNA topoisomerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF1083 Transaldolase (EC 2.2.1.2) 0.97 GFF2714 DNA topoisomerase I (EC 5.99.1.2) — —
Enterobacter sp. TBS_079 0.96 MPMX20_00716 Transaldolase B 0.94 MPMX20_02502 DNA topoisomerase 1 — —
Enterobacter asburiae PDN3 0.96 EX28DRAFT_3620 transaldolase 0.94 EX28DRAFT_0945 DNA topoisomerase I, bacterial — —
Pectobacterium carotovorum WPP14 0.92 HER17_RS02815 transaldolase 0.86 HER17_RS10875 type I DNA topoisomerase — —
Dickeya dianthicola ME23 0.92 DZA65_RS19465 transaldolase 0.85 DZA65_RS11015 type I DNA topoisomerase — —
Dickeya dadantii 3937 0.92 DDA3937_RS18395 transaldolase 0.85 DDA3937_RS10535 type I DNA topoisomerase — —
Dickeya dianthicola 67-19 0.91 HGI48_RS18325 transaldolase 0.85 HGI48_RS10535 type I DNA topoisomerase — —
Serratia liquefaciens MT49 0.91 IAI46_03055 transaldolase 0.87 IAI46_13970 type I DNA topoisomerase low > 86
Pantoea sp. MT58 0.90 IAI47_16195 transaldolase 0.87 IAI47_09235 type I DNA topoisomerase low > 76
Rahnella sp. WP5 0.90 EX31_RS03920 transaldolase 0.86 EX31_RS09895 type I DNA topoisomerase low > 89
Erwinia tracheiphila SCR3 0.88 LU632_RS02630 tal transaldolase 0.85 LU632_RS12555 topA type I DNA topoisomerase — —
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_17325 transaldolase 0.72 CSW01_08695 DNA topoisomerase 1 — —
Shewanella sp. ANA-3 0.71 Shewana3_3147 transaldolase B (RefSeq) 0.72 Shewana3_1729 DNA topoisomerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO3546 tal transaldolase (NCBI ptt file) 0.72 SO2705 topA DNA topoisomerase I (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.70 Sama_0913 transaldolase B (RefSeq) 0.72 Sama_1322 DNA topoisomerase I (RefSeq) — —
Shewanella loihica PV-4 0.70 Shew_1089 transaldolase B (RefSeq) 0.71 Shew_2224 DNA topoisomerase I (RefSeq) — —
Alteromonas macleodii MIT1002 0.69 MIT1002_03080 Transaldolase B 0.71 MIT1002_01705 DNA topoisomerase 1 — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS07805 transaldolase 0.68 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS07805 transaldolase 0.68 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas simiae WCS417 0.61 PS417_07730 transaldolase 0.68 PS417_07590 DNA topoisomerase I — —
Pseudomonas stutzeri RCH2 0.58 Psest_2708 transaldolase 0.68 Psest_2651 DNA topoisomerase I, bacterial low > 67
Pseudomonas putida KT2440 0.57 PP_2168 Transaldolase 0.67 PP_2139 DNA topoisomerase I — —
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00310 transaldolase 0.67 AO353_00495 DNA topoisomerase I low > 101
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1914 transaldolase 0.67 Psyr_3287 DNA topoisomerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1914 transaldolase 0.67 Psyr_3287 DNA topoisomerase I — —
Marinobacter adhaerens HP15 0.55 HP15_2241 transaldolase 0.66 HP15_1514 DNA topoisomerase I — —
Pseudomonas sp. S08-1 0.55 OH686_22740 transaldolase 0.67 OH686_21940 DNA topoisomerase I — —
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_2258 Transaldolase (EC 2.2.1.2) 0.68 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4009 Transaldolase (EC 2.2.1.2) 0.68 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) low > 87
Pseudomonas sp. RS175 0.54 PFR28_01142 Transaldolase 0.68 PFR28_01113 DNA topoisomerase 1 low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02175 transaldolase 0.68 AO356_02315 DNA topoisomerase I low > 104
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_58 Transaldolase (EC 2.2.1.2) 0.68 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) low > 87
Acinetobacter radioresistens SK82 0.47 MPMX26_01753 Transaldolase 0.63 MPMX26_00365 DNA topoisomerase 1 — —

Not shown: 15 genomes with orthologs for ECD_00008 only; 7 genomes with orthologs for ECD_01250 only