Conservation of cofitness between ECD_02776 and ECD_00371 in Escherichia coli BL21

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_00371 tRNA s(4)U8 sulfurtransferase 0.77 5
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 1.00 HEPCGN_07035 thiI tRNA sulfurtransferase low > 87
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 JDDGAC_12060 thiI tRNA sulfurtransferase low > 86
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI low > 55
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.99 EFB2_03634 tRNA sulfurtransferase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 KEDOAH_19560 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 NIAGMN_06460 thiI tRNA sulfurtransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_03253 tRNA sulfurtransferase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NOLOHH_01355 thiI tRNA sulfurtransferase low > 75
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 OKFHMN_08405 thiI tRNA sulfurtransferase low > 80
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 MCAODC_27630 thiI tRNA sulfurtransferase low > 87
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 BNILDI_22770 thiI tRNA sulfurtransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.97 GFF4327 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.90 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.91 MPMX20_01014 tRNA sulfurtransferase low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.93 BWI76_RS06395 tRNA 4-thiouridine(8) synthase ThiI low > 92
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.81 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 IAI46_04940 tRNA 4-thiouridine(8) synthase ThiI low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.80 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.88 DDA3937_RS05545 tRNA 4-thiouridine(8) synthase ThiI low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.88 HGI48_RS05605 tRNA 4-thiouridine(8) synthase ThiI low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.87 DZA65_RS05930 tRNA 4-thiouridine(8) synthase ThiI low > 75
Erwinia tracheiphila SCR3 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 LU632_RS18845 thiI tRNA 4-thiouridine(8) synthase ThiI low > 74
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.88 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI low > 75
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.65 Shewana3_2896 thiamine biosynthesis protein ThiI (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.64 CSW01_04585 tRNA 4-thiouridine(8) synthase ThiI low > 62
Shewanella oneidensis MR-1 0.68 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.65 SO1531 thiI thiamine biosynthesis protein ThiI (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.64 Sama_2431 thiamine biosynthesis protein ThiI (RefSeq) — —
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.64 Shew_2766 thiamine biosynthesis protein ThiI (RefSeq) low > 60
Marinobacter adhaerens HP15 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.44 HP15_3407 thiamine biosynthesis protein low > 73
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.51 AO353_12175 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.51 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.51 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.50 PFR28_04950 tRNA sulfurtransferase — —
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.50 Pf6N2E2_3819 Thiamine biosynthesis protein thiI — —
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.52 PP_5045 tRNA sulfurtransferase low > 96
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.51 AO356_09700 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.50 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.51 PS417_01660 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.51 Pf1N1B4_1604 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.52 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.51 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.51 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.50 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis 0.68 12

Not shown: 55 genomes with orthologs for ECD_02776 only; 0 genomes with orthologs for ECD_00371 only