Conservation of cofitness between CSW01_03485 and CSW01_14945 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03485 branched-chain amino acid transport system II carrier protein 1.0 CSW01_14945 2-hydroxyacid dehydrogenase 0.35 17
Shewanella amazonensis SB2B 0.50 Sama_2740 branched-chain amino acid transport system II carrier protein BrnQ (RefSeq) 0.64 Sama_0612 D-lactate dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.49 Shew_0769 branched-chain amino acid transport system II carrier protein (RefSeq) 0.64 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 60
Shewanella sp. ANA-3 0.45 Shewana3_3332 branched-chain amino acid transport system II carrier protein (RefSeq) 0.65 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 73
Shewanella oneidensis MR-1 0.44 SO0949 brnQ branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) 0.64 SO0968 ldhA D-lactate dehydrogenase (NCBI ptt file) low > 76
Pseudomonas aeruginosa PA14 0.42 IKLFDK_07615 branched-chain amino acid transport system II carrier protein 0.52 IKLFDK_04165 hydroxyacid dehydrogenase low > 100
Pseudomonas stutzeri RCH2 0.40 Psest_2489 branched-chain amino acid uptake carrier 0.51 Psest_4064 Lactate dehydrogenase and related dehydrogenases low > 67
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_5860 Branched-chain amino acid transport system carrier protein 0.54 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) low > 103
Pseudomonas sp. RS175 0.39 PFR28_03091 Branched-chain amino acid transport system 2 carrier protein 0.53 PFR28_03228 D-lactate dehydrogenase low > 88
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4264 Branched-chain amino acid transport system carrier protein 0.52 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_19720 branched-chain amino acid ABC transporter substrate-binding protein 0.53 AO356_19040 hydroxyacid dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_01810 branched-chain amino acid ABC transporter substrate-binding protein 0.51 AO353_02740 hydroxyacid dehydrogenase low > 101
Pseudomonas sp. S08-1 0.38 OH686_01945 branched-chain amino acid transport system II carrier protein 0.50 OH686_18940 D-lactate dehydrogenase low > 80
Dickeya dadantii 3937 0.38 DDA3937_RS05445 branched-chain amino acid transport system II carrier protein 0.63 DDA3937_RS12295 2-hydroxyacid dehydrogenase low > 74
Escherichia fergusonii Becca 0.38 EFB2_03656 Branched-chain amino acid transport system 2 carrier protein 0.66 EFB2_02576 D-lactate dehydrogenase low > 86
Escherichia coli Nissle 1917 0.38 ECOLIN_RS02420 branched-chain amino acid transporter carrier protein BrnQ 0.66 ECOLIN_RS08110 D-lactate dehydrogenase low > 55
Escherichia coli ECOR38 0.38 HEPCGN_07175 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.65 HEPCGN_26050 ldhA D-lactate dehydrogenase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_03275 Branched-chain amino acid transport system 2 carrier protein 0.66 OHPLBJKB_02331 D-lactate dehydrogenase low > 74
Escherichia coli BL21 0.38 ECD_00349 branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val 0.66 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.45 27
Escherichia coli ECRC102 0.38 NIAGMN_06590 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 NIAGMN_25930 ldhA D-lactate dehydrogenase low > 80
Escherichia coli ECRC98 0.38 JDDGAC_12190 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 JDDGAC_04285 ldhA D-lactate dehydrogenase low > 87
Escherichia coli ECRC100 0.38 OKFHMN_08535 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 OKFHMN_01795 ldhA D-lactate dehydrogenase low > 79
Escherichia coli ECRC99 0.38 KEDOAH_19430 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 KEDOAH_26640 ldhA D-lactate dehydrogenase — —
Escherichia coli ECRC62 0.38 BNILDI_22880 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 BNILDI_17985 ldhA D-lactate dehydrogenase low > 75
Escherichia coli ECOR27 0.38 NOLOHH_01465 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.65 NOLOHH_19530 ldhA D-lactate dehydrogenase low > 76
Escherichia coli ECRC101 0.38 MCAODC_27760 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.66 MCAODC_16140 ldhA D-lactate dehydrogenase low > 88
Pseudomonas sp. DMC3 0.38 GFF2525 Branched-chain amino acid transport system 2 carrier protein 0.53 GFF4824 D-lactate dehydrogenase low > 89
Escherichia coli BW25113 0.38 b0401 brnQ predicted branched chain amino acid transporter (LIV-II) (NCBI) 0.65 b1380 ldhA D-lactate dehydrogenase (NCBI) low > 76
Klebsiella michiganensis M5al 0.37 BWI76_RS06240 branched-chain amino acid transport system 2 carrier protein BrnQ 0.65 BWI76_RS12790 lactate dehydrogenase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF4299 Branched-chain amino acid transport system carrier protein 0.66 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) low > 78
Enterobacter sp. TBS_079 0.37 MPMX20_00988 Branched-chain amino acid transport system 2 carrier protein 0.65 MPMX20_02132 D-lactate dehydrogenase low > 85
Pseudomonas sp. SVBP6 0.37 COO64_RS18920 brnQ branched-chain amino acid transport system II carrier protein 0.53 COO64_RS07355 2-hydroxyacid dehydrogenase low > 93
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2573 branched-chain amino acid uptake carrier 0.66 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases low > 76
Pseudomonas fluorescens SBW25 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein 0.53 PFLU_RS18415 2-hydroxyacid dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein 0.53 PFLU_RS18415 2-hydroxyacid dehydrogenase low > 109
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3686 Branched-chain amino acid transport system carrier protein 0.51 Pf1N1B4_3500 D-lactate dehydrogenase (EC 1.1.1.28) low > 87
Pectobacterium carotovorum WPP14 0.37 HER17_RS16020 branched-chain amino acid transport system II carrier protein 0.61 HER17_RS09630 2-hydroxyacid dehydrogenase low > 75
Klebsiella pneumoniae MKP103 0.37 KDGMDA_14315 branched-chain amino acid transporter carrier protein BrnQ 0.65 KDGMDA_20645 D-lactate dehydrogenase low > 95
Pseudomonas putida KT2440 0.36 PP_4184 branched chain amino acid transporter 0.56 PP_1649 D-lactate dehydrogenase low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS19100 brnQ branched-chain amino acid transport system II carrier protein 0.56 JOY50_RS23880 2-hydroxyacid dehydrogenase low > 84
Pantoea sp. MT58 0.36 IAI47_14835 branched-chain amino acid transporter carrier protein BrnQ 0.62 IAI47_09495 2-hydroxyacid dehydrogenase low > 76
Serratia liquefaciens MT49 0.36 IAI46_04795 branched-chain amino acid transport system II carrier protein 0.65 IAI46_13355 2-hydroxyacid dehydrogenase low > 86
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS10315 branched-chain amino acid transporter carrier protein BrnQ 0.64 PagCFBP13505_RS06660 2-hydroxyacid dehydrogenase low > 74
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_01914 Branched-chain amino acid transport system 2 carrier protein 0.52 GEMAOFIL_03602 D-lactate dehydrogenase low > 93
Erwinia amylovora T8 0.35 OLJFJH_18165 branched-chain amino acid transporter carrier protein BrnQ 0.61 OLJFJH_13790 2-hydroxyacid dehydrogenase low > 58
Pseudomonas simiae WCS417 0.35 PS417_08920 branched-chain amino acid ABC transporter substrate-binding protein 0.53 PS417_16375 2-hydroxyacid dehydrogenase low > 88
Rahnella sp. WP5 0.34 EX31_RS22065 branched-chain amino acid transport system II carrier protein 0.63 EX31_RS06470 2-hydroxyacid dehydrogenase low > 89
Fusobacterium nucleatum SB010 0.26 HUW76_00240 branched-chain amino acid transport system II carrier protein 0.24 HUW76_07605 lactate dehydrogenase low > 35
Cellulophaga baltica 18 0.17 M666_RS05680 branched-chain amino acid transport system II carrier protein 0.36 M666_RS11765 2-hydroxyacid dehydrogenase low > 67

Not shown: 9 genomes with orthologs for CSW01_03485 only; 27 genomes with orthologs for CSW01_14945 only