| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07230 | | cytochrome-c oxidase, cbb3-type subunit I | 1.0 | CSW01_10445 | | succinate dehydrogenase, hydrophobic membrane anchor protein | 0.48 | 4 |
| Shewanella amazonensis SB2B | 0.88 | Sama_1791 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | 0.46 | Sama_1424 | | succinate dehydrogenase, cytochrome b subunit (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.87 | SO2364 | ccoN | cytochrome c oxidase, cbb3-type, subunit I (NCBI ptt file) | 0.47 | SO1927.1 | | hypothetical succinate dehydrogenase, hydrophobic subunit (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.87 | Shewana3_2107 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | 0.47 | Shewana3_1707 | | succinate dehydrogenase subunit D (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.86 | Shew_1985 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | 0.51 | Shew_1652 | | putative succinate dehydrogenase, hydrophobic subunit (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.82 | MIT1002_02129 | | hypothetical protein | 0.46 | MIT1002_01945 | | Succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Pseudomonas aeruginosa PA14 | 0.80 | IKLFDK_07450 | | cytochrome-c oxidase cbb3-type subunit I | 0.34 | IKLFDK_07575 | | succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.80 | DQ20_RS53550 | ccoN;go_function=cytochrome-c | cytochrome-c oxidase cbb3-type subunit I | 0.34 | DQ20_RS53675 | sdhD;go_component=plasma | succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.80 | DY961_RS19425 | ccoN;go_function=cytochrome-c | cytochrome-c oxidase cbb3-type subunit I | 0.34 | DY961_RS19560 | sdhD;go_component=plasma | succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Pseudomonas sp. BP01 | 0.80 | JOY50_RS00055 | ccoN | cytochrome-c oxidase, cbb3-type subunit I | 0.33 | JOY50_RS19060 | sdhD | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas putida KT2440 | 0.80 | PP_4250 | | cytochrome c oxidase subunit I, cbb3-type | 0.33 | PP_4192 | | succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Pseudomonas fluorescens SBW25 | 0.79 | PFLU_RS22320 | | cytochrome-c oxidase, cbb3-type subunit I | 0.32 | PFLU_RS08940 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.79 | PfGW456L13_4056 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | 0.33 | PfGW456L13_4272 | | Succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.79 | PFLU_RS22320 | | cytochrome-c oxidase, cbb3-type subunit I | 0.32 | PFLU_RS08940 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas simiae WCS417 | 0.79 | PS417_20700 | | cbb3-type cytochrome c oxidase subunit I | 0.32 | PS417_08880 | | succinate dehydrogenase | — | — |
| Pseudomonas sp. DMC3 | 0.79 | GFF729 | | Cbb3-type cytochrome c oxidase subunit CcoN1 | 0.33 | GFF2517 | | Succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Pseudomonas sp. SVBP6 | 0.79 | COO64_RS18710 | ccoN | cytochrome-c oxidase, cbb3-type subunit I | 0.33 | COO64_RS18880 | sdhD | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas orientalis W4I3 | 0.79 | QF045_RS22515 | | cytochrome-c oxidase, cbb3-type subunit I | 0.32 | QF045_RS11575 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.79 | Pf1N1B4_3884 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | 0.32 | Pf1N1B4_3678 | | Succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Pseudomonas lactucae CFBP13502 | 0.79 | GEMAOFIL_04285 | | Cbb3-type cytochrome c oxidase subunit CcoN1 | 0.32 | GEMAOFIL_01906 | | Succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_02175 | | cytochrome c oxidase, cbb3-type, subunit I | 0.33 | OH686_01985 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas sp. RS175 | 0.78 | PFR28_01095 | | Cbb3-type cytochrome c oxidase subunit CcoN1 | 0.34 | PFR28_03099 | | Succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Marinobacter adhaerens HP15 | 0.78 | HP15_2107 | | cytochrome c oxidase, cbb3-type, subunit I | 0.42 | HP15_1518 | | succinate dehydrogenase, hydrophobic membrane anchor | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.78 | AO356_02405 | | cytochrome C oxidase Cbb3 | 0.34 | AO356_19680 | | succinate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.78 | Pf6N2E2_2305 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | 0.34 | Pf6N2E2_5852 | | Succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.78 | ABZR87_RS11145 | | cytochrome-c oxidase, cbb3-type subunit I | 0.28 | ABZR87_RS14565 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.78 | AO353_00585 | | cytochrome C oxidase Cbb3 | 0.33 | AO353_01850 | | succinate dehydrogenase | — | — |
| Pseudomonas stutzeri RCH2 | 0.78 | Psest_2527 | | cytochrome c oxidase, cbb3-type, subunit I | 0.33 | Psest_2497 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Dechlorosoma suillum PS | 0.78 | Dsui_1627 | | cytochrome c oxidase, cbb3-type, subunit I | 0.27 | Dsui_2212 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Kangiella aquimarina DSM 16071 | 0.77 | B158DRAFT_1966 | | cytochrome c oxidase, cbb3-type, subunit I | 0.38 | B158DRAFT_1421 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Pseudomonas segetis P6 | 0.77 | MPMX49_02314 | | Cbb3-type cytochrome c oxidase subunit CcoN1 | 0.30 | MPMX49_02342 | | Succinate dehydrogenase hydrophobic membrane anchor subunit | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_3413 | | Cytochrome c oxidase cbb3-type, subunit I | 0.33 | Psyr_2006 | | succinate dehydrogenase subunit D | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_3413 | | Cytochrome c oxidase cbb3-type, subunit I | 0.33 | Psyr_2006 | | succinate dehydrogenase subunit D | — | — |
| Variovorax sp. OAS795 | 0.74 | ABID97_RS16225 | | cytochrome-c oxidase, cbb3-type subunit I | 0.23 | ABID97_RS08500 | | succinate dehydrogenase, hydrophobic membrane anchor protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.73 | Ac3H11_968 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | 0.28 | Ac3H11_3157 | | Succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
| Variovorax sp. SCN45 | 0.71 | GFF6964 | | Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) | 0.22 | GFF3898 | | Succinate dehydrogenase hydrophobic membrane anchor protein | — | — |
Not shown: 31 genomes with orthologs for CSW01_07230 only; 31 genomes with orthologs for CSW01_10445 only