Conservation of cofitness between CSW01_04865 and CSW01_07185 in Vibrio cholerae E7946 ATCC 55056

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 CSW01_07185 universal stress protein UspE 0.43 9
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 PagCFBP13505_RS06580 universal stress protein UspE low > 74
Pantoea sp. MT58 0.85 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 IAI47_09575 universal stress protein UspE low > 76
Dickeya dadantii 3937 0.84 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 DDA3937_RS10955 universal stress protein UspE — —
Dickeya dianthicola ME23 0.84 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 DZA65_RS11365 universal stress protein UspE low > 75
Pectobacterium carotovorum WPP14 0.83 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 HER17_RS10520 universal stress protein UspE low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 HGI48_RS10905 universal stress protein UspE — —
Shewanella amazonensis SB2B 0.82 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.52 Sama_1800 universal stress protein UspE (RefSeq) low > 62
Shewanella loihica PV-4 0.82 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.54 Shew_1994 universal stress protein UspE (RefSeq) low > 60
Serratia liquefaciens MT49 0.82 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 IAI46_13265 universal stress protein UspE low > 87
Rahnella sp. WP5 0.82 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 EX31_RS07205 universal stress protein UspE low > 89
Escherichia coli Nissle 1917 0.82 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 ECOLIN_RS08000 universal stress protein UspE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.55 OHPLBJKB_02349 Universal stress protein E — —
Shewanella sp. ANA-3 0.82 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.53 Shewana3_2116 universal stress protein UspE (RefSeq) — —
Escherichia coli BL21 0.82 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.55 ECD_01310 stress-induced protein — —
Escherichia coli BW25113 0.82 b0636 ybeA hypothetical protein (NCBI) 0.55 b1333 uspE stress-induced protein (NCBI) low > 76
Shewanella oneidensis MR-1 0.81 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.54 SO2355 universal stress protein family (NCBI ptt file) — —
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 BNILDI_18095 uspE universal stress protein UspE — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_16400 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 KDGMDA_21000 universal stress protein UspE low > 95
Escherichia coli ECRC100 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 OKFHMN_02245 uspE universal stress protein UspE — —
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 JDDGAC_04790 uspE universal stress protein UspE — —
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 MCAODC_16025 uspE universal stress protein UspE — —
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 HEPCGN_25920 uspE universal stress protein UspE low > 88
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.55 EFB2_02594 Universal stress protein E low > 86
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 KEDOAH_26525 uspE universal stress protein UspE — —
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 NOLOHH_19945 uspE universal stress protein UspE — —
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 NIAGMN_26415 uspE universal stress protein UspE — —
Erwinia tracheiphila SCR3 0.81 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 LU632_RS11425 uspE universal stress protein UspE low > 73
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.55 EX28DRAFT_1542 Universal stress protein UspA and related nucleotide-binding proteins — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_02460 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 IJEDHG_23145 uspE universal stress protein UspE low > 61
Enterobacter sp. TBS_079 0.81 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.55 MPMX20_02033 Universal stress protein E low > 85
Erwinia amylovora T8 0.80 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 OLJFJH_13920 universal stress protein UspE low > 58
Klebsiella michiganensis M5al 0.80 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 BWI76_RS16190 universal stress protein UspE low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.55 GFF2657 Universal stress protein E low > 78
Alteromonas macleodii MIT1002 0.77 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.50 MIT1002_02138 Universal stress protein E — —
Pseudomonas stutzeri RCH2 0.65 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.18 Psest_2307 Universal stress protein UspA and related nucleotide-binding proteins low > 67
Pseudomonas sp. SVBP6 0.65 COO64_RS15615 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.16 COO64_RS09935 universal stress protein low > 93
Pseudomonas sp. RS175 0.65 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.19 PFR28_02374 Universal stress protein E low > 88
Pseudomonas sp. DMC3 0.65 GFF3879 Ribosomal RNA large subunit methyltransferase H 0.18 GFF1700 Universal stress protein E low > 89
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.18 Pf6N2E2_567 Universal stress protein family 7 low > 103
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_06480 50S rRNA methyltransferase 0.18 AO353_19850 universal stress protein low > 101
Pseudomonas sp. BP01 0.65 JOY50_RS17695 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.18 JOY50_RS12780 universal stress protein low > 84
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.17 Pf1N1B4_4566 Universal stress protein family 7 — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_15305 50S rRNA methyltransferase 0.19 AO356_24400 universal stress protein UspA low > 104
Pseudomonas putida KT2440 0.64 PP_4808 23S rRNA m3psi1915 methyltransferase 0.16 PP_2187 Universal stress protein family low > 96
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_05099 Ribosomal RNA large subunit methyltransferase H 0.18 GEMAOFIL_03300 Universal stress protein E — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 PFLU_RS17010 universal stress protein A low > 109
Pseudomonas orientalis W4I3 0.64 QF045_RS27015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.18 QF045_RS14980 universal stress protein low > 93
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 PFLU_RS17010 universal stress protein A low > 109
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.18 PfGW456L13_3376 Universal stress protein family 7 — —
Pseudomonas simiae WCS417 0.64 PS417_24730 50S rRNA methyltransferase 0.17 PS417_14980 universal stress protein UspA — —

Not shown: 63 genomes with orthologs for CSW01_04865 only; 0 genomes with orthologs for CSW01_07185 only