Conservation of cofitness between CSW01_12980 and CSW01_05905 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12980 ATP-dependent RNA helicase DbpA 1.0 CSW01_05905 DUF72 domain-containing protein 0.41 12
Shewanella amazonensis SB2B 0.68 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) 0.48 Sama_3238 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.67 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) 0.55 Shewana3_0893 hypothetical protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.55 IAI46_14765 ATP-dependent RNA helicase DbpA 0.44 IAI46_14660 DUF72 domain-containing protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_07850 ATP-dependent RNA helicase 0.36 AO353_16330 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA 0.35 PfGW456L13_4736 FIG003003: hypothetical protein low > 87
Pseudomonas aeruginosa PA14 0.54 IKLFDK_23155 ATP-dependent RNA helicase DbpA 0.36 IKLFDK_18805 Protein of unknown function DUF72 low > 98
Pseudomonas aeruginosa MRSN321 0.54 PFGADD_00462 dbpA ATP-dependent RNA helicase DbpA 0.36 PFGADD_01284 DUF72 domain-containing protein low > 99
Pseudomonas protegens RBAN4 0.54 FABNJH_29095 dbpA ATP-dependent RNA helicase DbpA 0.39 FABNJH_05950 DUF72 domain-containing protein — —
Pseudomonas aeruginosa PUPa3 0.54 NPBIFN_00466 dbpA ATP-dependent RNA helicase DbpA 0.36 NPBIFN_01303 DUF72 domain-containing protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.37 Pf1N1B4_3055 FIG003003: hypothetical protein low > 87
Pseudomonas segetis P6 0.54 ACVTMO_RS03355 dbpA ATP-dependent RNA helicase DbpA 0.39 ACVTMO_RS08030 DUF72 domain-containing protein low > 75
Pseudomonas sp. RS175 0.54 PFR28_04172 ATP-dependent RNA helicase DbpA 0.36 PFR28_00372 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA 0.35 Pf6N2E2_3099 FIG003003: hypothetical protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_13770 ATP-dependent RNA helicase 0.36 AO356_06165 hypothetical protein low > 104
Pseudomonas sp. DMC3 0.54 GFF142 ATP-dependent RNA helicase DbpA 0.37 GFF2027 hypothetical protein low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_0516 ATP-dependent RNA helicase DbpA 0.38 Psyr_1322 Protein of unknown function DUF72 low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_0516 ATP-dependent RNA helicase DbpA 0.38 Psyr_1322 Protein of unknown function DUF72 low > 86
Pseudomonas stutzeri RCH2 0.53 Psest_0344 Superfamily II DNA and RNA helicases 0.38 Psest_1561 Uncharacterized conserved protein low > 67
Pectobacterium carotovorum WPP14 0.53 HER17_RS06775 ATP-dependent RNA helicase DbpA 0.40 HER17_RS11875 DUF72 domain-containing protein low > 75
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.39 PFLU_RS06150 DUF72 domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.39 PFLU_RS06150 DUF72 domain-containing protein low > 109
Dickeya dadantii 3937 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA 0.42 DDA3937_RS10050 DUF72 domain-containing protein low > 74
Pseudomonas simiae WCS417 0.53 PS417_26370 RNA helicase 0.41 PS417_06080 hypothetical protein low > 88
Pseudomonas putida KT2440 0.53 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.41 PP_1509 conserved protein of unknown function low > 96
Pseudomonas sp. SVBP6 0.53 COO64_RS17620 dbpA ATP-dependent RNA helicase DbpA 0.39 COO64_RS19515 DUF72 domain-containing protein low > 91
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_05400 ATP-dependent RNA helicase DbpA 0.40 GEMAOFIL_01386 hypothetical protein low > 96
Erwinia amylovora T8 0.52 OLJFJH_13775 ATP-dependent RNA helicase DbpA 0.44 OLJFJH_12830 Protein of unknown function DUF72 low > 58
Escherichia fergusonii Becca 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA 0.43 EFB2_02074 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.52 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA 0.41 ECOLIN_RS10685 DUF72 domain-containing protein low > 55
Pseudomonas orientalis W4I3 0.52 QF045_RS00755 ATP-dependent RNA helicase DbpA 0.41 QF045_RS08930 DUF72 domain-containing protein low > 93
Escherichia coli ECOR38 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA 0.43 HEPCGN_04645 yecE UPF0759 protein YecE low > 88
Escherichia coli ECOR27 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA 0.43 NOLOHH_16680 yecE UPF0759 protein YecE low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS11065 ATP-dependent RNA helicase DbpA 0.42 HGI48_RS10080 DUF72 domain-containing protein 0.39 71
Dickeya dianthicola ME23 0.52 DZA65_RS11470 ATP-dependent RNA helicase DbpA 0.42 DZA65_RS10490 DUF72 domain-containing protein low > 75
Escherichia coli ECRC62 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA 0.43 BNILDI_15470 yecE UPF0759 protein YecE low > 75
Escherichia coli BL21 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA 0.43 ECD_01839 UPF0759 family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA 0.43 OHPLBJKB_01860 hypothetical protein low > 74
Klebsiella pneumoniae MKP103 0.52 KDGMDA_20600 ATP-dependent RNA helicase DbpA 0.42 KDGMDA_25445 Protein of unknown function DUF72 low > 94
Pseudomonas sp. BP01 0.52 JOY50_RS09935 dbpA ATP-dependent RNA helicase DbpA 0.42 JOY50_RS26050 DUF72 domain-containing protein low > 84
Escherichia coli BW25113 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) 0.43 b1868 yecE hypothetical protein (NCBI) low > 76
Klebsiella pneumoniae MRSN742743 0.52 GJGHJB_02753 dbpA ATP-dependent RNA helicase DbpA 0.42 GJGHJB_01792 DUF72 domain-containing protein 0.20 63
Escherichia coli ECRC99 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA 0.42 KEDOAH_01870 yecE UPF0759 protein YecE — —
Escherichia coli ECRC101 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA 0.42 MCAODC_19170 yecE UPF0759 protein YecE low > 87
Escherichia coli ECRC102 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA 0.42 NIAGMN_01825 yecE UPF0759 protein YecE low > 80
Escherichia coli ECRC100 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA 0.42 OKFHMN_26235 yecE UPF0759 protein YecE low > 79
Pseudomonas sp. S08-1 0.52 OH686_14770 ATP-dependent 23S rRNA helicase DbpA 0.37 OH686_06775 UPF0759 protein YecE low > 80
Escherichia coli ECRC98 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA 0.42 JDDGAC_00810 yecE UPF0759 protein YecE low > 87
Rahnella sp. WP5 0.52 EX31_RS24740 ATP-dependent RNA helicase DbpA 0.44 EX31_RS17275 DUF72 domain-containing protein low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA 0.43 GFF1649 FIG003003: hypothetical protein low > 78
Enterobacter asburiae PDN3 0.51 EX28DRAFT_1006 Superfamily II DNA and RNA helicases 0.44 EX28DRAFT_0689 Uncharacterized conserved protein low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_02441 ATP-dependent RNA helicase DbpA 0.43 MPMX20_02773 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.50 BWI76_RS12705 ATP-dependent RNA helicase 0.41 BWI76_RS18180 hypothetical protein 0.12 48
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13516_RS15345 dbpA ATP-dependent RNA helicase DbpA 0.40 PagCFBP13516_RS08595 DUF72 domain-containing protein low > 80
Pantoea sp. MT58 0.49 IAI47_15055 ATP-dependent RNA helicase DbpA 0.40 IAI47_08420 DUF72 domain-containing protein low > 76
Erwinia tracheiphila HP pepo 2.2 0.48 IJEDHG_24880 dbpA ATP-dependent RNA helicase DbpA 0.45 IJEDHG_22100 Protein of unknown function DUF72 low > 61
Erwinia tracheiphila SCR3 0.48 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA 0.45 LU632_RS13445 DUF72 domain-containing protein low > 73
Alteromonas macleodii MIT1002 0.45 MIT1002_03748 ATP-independent RNA helicase DbpA 0.36 MIT1002_01328 hypothetical protein — —

Not shown: 26 genomes with orthologs for CSW01_12980 only; 1 genomes with orthologs for CSW01_05905 only