Conservation of cofitness between CSW01_04585 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04585 tRNA 4-thiouridine(8) synthase ThiI 1.0 CSW01_03470 peptide chain release factor 3 0.78 6
Dickeya dianthicola 67-19 0.67 HGI48_RS05605 tRNA 4-thiouridine(8) synthase ThiI 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Dickeya dianthicola ME23 0.67 DZA65_RS05930 tRNA 4-thiouridine(8) synthase ThiI 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS05545 tRNA 4-thiouridine(8) synthase ThiI 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Pectobacterium carotovorum WPP14 0.66 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Rahnella sp. WP5 0.66 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI 0.86 EX31_RS04095 peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.66 IAI46_04940 tRNA 4-thiouridine(8) synthase ThiI 0.86 IAI46_02875 peptide chain release factor 3 low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF4327 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.86 GFF1035 Peptide chain release factor 3 0.62 68
Escherichia coli ECRC98 0.66 JDDGAC_12060 thiI tRNA sulfurtransferase 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 86
Escherichia coli ECRC102 0.66 NIAGMN_06460 thiI tRNA sulfurtransferase 0.86 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli ECRC100 0.66 OKFHMN_08405 thiI tRNA sulfurtransferase 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 80
Escherichia coli ECRC101 0.66 MCAODC_27630 thiI tRNA sulfurtransferase 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC99 0.66 KEDOAH_19560 thiI tRNA sulfurtransferase 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.66 EFB2_03634 tRNA sulfurtransferase 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Klebsiella michiganensis M5al 0.66 BWI76_RS06395 tRNA 4-thiouridine(8) synthase ThiI 0.87 BWI76_RS04100 peptide chain release factor 3 0.20 88
Erwinia tracheiphila SCR3 0.65 LU632_RS18845 thiI tRNA 4-thiouridine(8) synthase ThiI 0.85 LU632_RS02475 prfC peptide chain release factor 3 low > 74
Erwinia amylovora T8 0.65 OLJFJH_18050 tRNA sulfurtransferase 0.85 OLJFJH_01655 peptide chain release factor 3 0.52 21
Escherichia coli ECOR38 0.65 HEPCGN_07035 thiI tRNA sulfurtransferase 0.86 HEPCGN_09285 prfC peptide chain release factor 3 0.71 59
Escherichia coli BW25113 0.65 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli Nissle 1917 0.65 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli BL21 0.65 ECD_00371 tRNA s(4)U8 sulfurtransferase 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03253 tRNA sulfurtransferase 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Escherichia coli ECOR27 0.65 NOLOHH_01355 thiI tRNA sulfurtransferase 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 75
Escherichia coli ECRC62 0.65 BNILDI_22770 thiI tRNA sulfurtransferase 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Enterobacter sp. TBS_079 0.64 MPMX20_01014 tRNA sulfurtransferase 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Pantoea sp. MT58 0.64 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI 0.85 IAI47_03375 peptide chain release factor 3 0.27 57
Shewanella loihica PV-4 0.60 Shew_2766 thiamine biosynthesis protein ThiI (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Shewanella sp. ANA-3 0.59 Shewana3_2896 thiamine biosynthesis protein ThiI (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.59 Sama_2431 thiamine biosynthesis protein ThiI (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) — —
Pseudomonas stutzeri RCH2 0.46 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI 0.70 Psest_3351 peptide chain release factor 3 0.31 24
Pseudomonas sp. BP01 0.45 JOY50_RS09465 thiI tRNA uracil 4-sulfurtransferase ThiI 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas sp. SVBP6 0.45 COO64_RS13350 thiI tRNA uracil 4-sulfurtransferase ThiI 0.69 COO64_RS04060 peptide chain release factor 3 — —
Pseudomonas putida KT2440 0.45 PP_5045 tRNA sulfurtransferase 0.69 PP_0872 Peptide chain release factor 3 0.40 3
Pseudomonas aeruginosa PA14 0.45 IKLFDK_27930 tRNA sulfurtransferase 0.69 IKLFDK_20120 peptide chain release factor 3 low > 101
Pseudomonas simiae WCS417 0.44 PS417_01660 tRNA s(4)U8 sulfurtransferase 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.69 PFLU_RS04070 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.69 PFLU_RS04070 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_12175 tRNA s(4)U8 sulfurtransferase 0.69 AO353_05420 peptide chain release factor 3 — —
Pseudomonas sp. S08-1 0.44 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis 0.69 OH686_08765 peptide chain release factor 3 — —
Pseudomonas sp. DMC3 0.44 GFF4076 tRNA sulfurtransferase 0.69 GFF5016 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_3819 Thiamine biosynthesis protein thiI 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.69 PfGW456L13_5060 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09700 tRNA s(4)U8 sulfurtransferase 0.69 AO356_07285 peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.43 PFR28_04950 tRNA sulfurtransferase 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Marinobacter adhaerens HP15 0.39 HP15_3407 thiamine biosynthesis protein 0.81 HP15_541 peptide chain release factor 3 low > 73

Not shown: 2 genomes with orthologs for CSW01_04585 only; 56 genomes with orthologs for CSW01_03470 only