Conservation of cofitness between CSW01_08135 and CSW01_03280 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08135 MFS transporter 1.0 CSW01_03280 16S rRNA methyltransferase 0.66 11
Shewanella loihica PV-4 0.27 Shew_1441 major facilitator transporter (RefSeq) 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.26 SO1917 multidrug resistance protein, putative (NCBI ptt file) 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_1692 Xaa-His dipeptidase (RefSeq) 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) low > 73
Pseudomonas aeruginosa PA14 0.24 IKLFDK_28385 MFS transporter 0.31 IKLFDK_00370 Ribosomal RNA small subunit methyltransferase C low > 100
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_09295 hypothetical protein 0.29 AO356_06940 16S rRNA methyltransferase low > 104
Serratia liquefaciens MT49 0.24 IAI46_11675 MFS transporter 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_256 Permeases of the major facilitator superfamily 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Klebsiella michiganensis M5al 0.24 BWI76_RS15965 MFS transporter 0.38 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase low > 92
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_12595 hypothetical protein 0.28 AO353_14995 16S rRNA methyltransferase low > 101
Klebsiella pneumoniae MKP103 0.24 KDGMDA_21220 MFS transporter 0.35 KDGMDA_12350 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 95
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_3736 Permeases of the major facilitator superfamily 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 103
Pseudomonas sp. RS175 0.24 PFR28_05018 Inner membrane transport protein YnfM 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C low > 88
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_1531 Permeases of the major facilitator superfamily 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Pseudomonas sp. BP01 0.23 JOY50_RS09340 MFS transporter 0.27 JOY50_RS19445 class I SAM-dependent methyltransferase low > 84
Escherichia coli ECOR27 0.23 NOLOHH_18235 araJ MFS transporter 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Escherichia coli ECRC102 0.23 NIAGMN_00345 ynfM Inner membrane transport protein YnfM 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 80
Escherichia coli ECOR38 0.23 HEPCGN_06105 ynfM Inner membrane transport protein YnfM 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 88
Escherichia coli ECRC101 0.23 MCAODC_17680 ynfM Inner membrane transport protein YnfM 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_02130 Inner membrane transport protein YnfM 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 74
Escherichia coli ECRC100 0.23 OKFHMN_27730 ynfM Inner membrane transport protein YnfM 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 79
Escherichia coli BL21 0.23 ECD_01565 putative arabinose efflux transporter 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.23 b1596 ynfM predicted transporter (NCBI) 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) low > 76
Escherichia coli ECRC62 0.23 BNILDI_17025 ynfM Inner membrane transport protein YnfM 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli ECRC98 0.23 JDDGAC_02320 ynfM Inner membrane transport protein YnfM 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia fergusonii Becca 0.23 EFB2_02396 Inner membrane transport protein YnfM 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Pseudomonas simiae WCS417 0.23 PS417_02015 membrane protein 0.29 PS417_04525 16S rRNA methyltransferase low > 88
Escherichia coli Nissle 1917 0.23 ECOLIN_RS08915 MFS transporter 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 55
Escherichia coli ECRC99 0.23 KEDOAH_00375 araJ MFS transporter 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Pseudomonas putida KT2440 0.23 PP_5072 efflux transporter 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C low > 96
Acinetobacter radioresistens SK82 0.23 MPMX26_00126 Inner membrane transport protein YnfM 0.27 MPMX26_02491 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS02060 MFS transporter 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.23 PFLU_RS02060 MFS transporter 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Enterobacter sp. TBS_079 0.23 MPMX20_02061 Inner membrane transport protein YnfM 0.38 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Rahnella sp. WP5 0.23 EX31_RS16995 MFS transporter 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 89
Pectobacterium carotovorum WPP14 0.23 HER17_RS10745 MFS transporter 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Pseudomonas sp. SVBP6 0.23 COO64_RS13105 MFS transporter 0.30 COO64_RS03375 class I SAM-dependent methyltransferase low > 93
Pseudomonas sp. DMC3 0.23 GFF3107 Inner membrane transport protein YnfM 0.29 GFF4455 Ribosomal RNA small subunit methyltransferase C low > 89
Pantoea agglomerans CFBP13505 P0401 0.22 PagCFBP13505_RS06415 MFS transporter 0.35 PagCFBP13505_RS08520 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Rhizobium sp. OAE497 0.22 ABIE40_RS01535 MFS transporter 0.13 ABIE40_RS00360 class I SAM-dependent methyltransferase low > 107
Pseudomonas lactucae CFBP13502 0.22 GEMAOFIL_00635 Inner membrane transport protein YnfM 0.29 GEMAOFIL_01108 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_0420 General substrate transporter:Major facilitator superfamily 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_0420 General substrate transporter:Major facilitator superfamily 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pantoea sp. MT58 0.22 IAI47_09740 MFS transporter 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Enterobacter asburiae PDN3 0.22 EX28DRAFT_1495 Arabinose efflux permease 0.38 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF1787 Permeases of the major facilitator superfamily 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Erwinia amylovora T8 0.21 OLJFJH_14285 MFS transporter 0.38 OLJFJH_01925 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 58
Shewanella amazonensis SB2B 0.20 Sama_2214 multidrug resistance protein, putative (RefSeq) 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62
Dickeya dadantii 3937 0.20 DDA3937_RS10665 MFS transporter 0.37 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Dickeya dianthicola 67-19 0.20 HGI48_RS10665 MFS transporter 0.36 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 71
Acinetobacter baumannii LAC-4 0.19 RR41_RS01155 MFS transporter 0.27 RR41_RS03295 methyltransferase 0.32 24
Dickeya dianthicola ME23 0.19 DZA65_RS11135 MFS transporter 0.36 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Pseudomonas segetis P6 0.18 MPMX49_01797 Inner membrane transport protein YnfM 0.26 MPMX49_03708 Ribosomal RNA small subunit methyltransferase C low > 75

Not shown: 28 genomes with orthologs for CSW01_08135 only; 3 genomes with orthologs for CSW01_03280 only