Conservation of cofitness between CSW01_02080 and CSW01_02830 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02080 UvrABC system protein A 1.0 CSW01_02830 murein hydrolase activator NlpD 0.50 11
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF1429 Excinuclease ABC subunit A 0.39 GFF4789 Lipoprotein NlpD low > 78
Serratia liquefaciens MT49 0.82 IAI46_22905 excinuclease ABC subunit UvrA 0.38 IAI46_03785 murein hydrolase activator NlpD low > 87
Rahnella sp. WP5 0.82 EX31_RS11990 excinuclease ABC subunit UvrA 0.41 EX31_RS07830 murein hydrolase activator NlpD low > 89
Shewanella amazonensis SB2B 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.33 Sama_1043 lipoprotein NlpD (RefSeq) low > 62
Shewanella sp. ANA-3 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.36 Shewana3_1123 peptidase M23B (RefSeq) low > 73
Shewanella loihica PV-4 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.35 Shew_1212 peptidase M23B (RefSeq) low > 60
Shewanella oneidensis MR-1 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.34 SO3433 nlpD lipoprotein NlpD (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.81 MIT1002_00179 Excinuclease ABC subunit A 0.37 MIT1002_00626 Murein hydrolase activator NlpD precursor low > 70
Pseudomonas aeruginosa MRSN321 0.77 DY961_RS29405 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.30 DY961_RS14860 peptidoglycan DD-metalloendopeptidase family protein low > 100
Pseudomonas aeruginosa PA14 0.77 IKLFDK_21795 excinuclease ABC subunit UvrA 0.30 IKLFDK_18500 Lipo NlpD/LppB-like protein low > 98
Pseudomonas aeruginosa PUPa3 0.77 DQ20_RS43730 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.30 DQ20_RS42265 peptidoglycan DD-metalloendopeptidase family protein low > 101
Pseudomonas sp. S08-1 0.77 OH686_15495 excinuclease ABC subunit A 0.29 OH686_18180 Murein hydrolase activator NlpD low > 80
Pseudomonas sp. DMC3 0.77 GFF3792 UvrABC system protein A 0.29 GFF2083 Murein hydrolase activator NlpD — —
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.29 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases low > 40
Pseudomonas sp. BP01 0.77 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.28 JOY50_RS23750 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_05194 UvrABC system protein A 0.29 GEMAOFIL_01442 hypothetical protein — —
Pseudomonas putida KT2440 0.77 PP_0483 excinuclease (uvrABC system protein A) 0.28 PP_1622 metallopeptidase, M23B subfamily — —
Pseudomonas sp. SVBP6 0.77 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.30 COO64_RS19790 peptidoglycan DD-metalloendopeptidase family protein low > 93
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_06855 ABC-ATPase UvrA 0.29 AO353_16610 peptigoglycan-binding protein LysM — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.20 LRK53_RS12255 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.21 OKGIIK_08100 Peptidase M23 0.65 40
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.21 LRK54_RS16665 peptidoglycan DD-metalloendopeptidase family protein low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.21 LRK55_RS16390 peptidoglycan DD-metalloendopeptidase family protein — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.21 ABZR86_RS06580 peptidoglycan DD-metalloendopeptidase family protein low > 74
Dechlorosoma suillum PS 0.71 Dsui_1622 excinuclease ABC, A subunit 0.30 Dsui_1970 metalloendopeptidase-like membrane protein low > 51
Acinetobacter baumannii LAC-4 0.70 RR41_RS01040 excinuclease ABC subunit UvrA 0.20 RR41_RS05350 peptidoglycan DD-metalloendopeptidase family protein low > 55
Methylophilus sp. DMC18 0.69 GFF2008 UvrABC system protein A 0.20 GFF448 Murein hydrolase activator NlpD low > 43
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS19810 excinuclease ABC subunit A 0.27 HSERO_RS14835 peptidase M23 0.47 25
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02145 excinuclease ABC subunit A 0.22 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD low > 128
Variovorax sp. SCN45 0.65 GFF4944 Excinuclease ABC subunit A 0.27 GFF2843 Murein hydrolase activator NlpD 0.79 34
Variovorax sp. OAS795 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA 0.27 ABID97_RS10725 peptidoglycan DD-metalloendopeptidase family protein low > 91
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.23 Ac3H11_1786 Lipoprotein NlpD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF2755 Excinuclease ABC subunit A 0.24 GFF3881 Lipoprotein NlpD low > 90
Castellaniella sp019104865 MT123 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.22 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein — —

Not shown: 86 genomes with orthologs for CSW01_02080 only; 0 genomes with orthologs for CSW01_02830 only