Conservation of cofitness between CSW01_01015 and CSW01_02830 in Vibrio cholerae E7946 ATCC 55056

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01015 DNA helicase II 1.0 CSW01_02830 murein hydrolase activator NlpD 0.83 5
Serratia liquefaciens MT49 0.71 IAI46_00735 DNA helicase II 0.38 IAI46_03785 murein hydrolase activator NlpD low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.39 GFF4789 Lipoprotein NlpD low > 78
Rahnella sp. WP5 0.68 EX31_RS15175 DNA helicase II 0.41 EX31_RS07830 murein hydrolase activator NlpD low > 89
Shewanella sp. ANA-3 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.36 Shewana3_1123 peptidase M23B (RefSeq) low > 73
Shewanella oneidensis MR-1 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.34 SO3433 nlpD lipoprotein NlpD (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.33 Sama_1043 lipoprotein NlpD (RefSeq) 0.51 60
Shewanella loihica PV-4 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.35 Shew_1212 peptidase M23B (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.65 MIT1002_00153 DNA helicase II 0.37 MIT1002_00626 Murein hydrolase activator NlpD precursor low > 70
Pseudomonas aeruginosa PA14 0.60 IKLFDK_26200 DNA helicase II 0.30 IKLFDK_18500 Lipo NlpD/LppB-like protein low > 98
Pseudomonas aeruginosa MRSN321 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II 0.30 DY961_RS14860 peptidoglycan DD-metalloendopeptidase family protein 0.52 22
Pseudomonas aeruginosa PUPa3 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II 0.30 DQ20_RS42265 peptidoglycan DD-metalloendopeptidase family protein 0.40 58
Pseudomonas putida KT2440 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.28 PP_1622 metallopeptidase, M23B subfamily — —
Pseudomonas sp. BP01 0.60 JOY50_RS08735 uvrD DNA helicase II 0.28 JOY50_RS23750 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas sp. SVBP6 0.60 COO64_RS01845 uvrD DNA helicase II 0.30 COO64_RS19790 peptidoglycan DD-metalloendopeptidase family protein low > 93
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS29900 DNA helicase II 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS29900 DNA helicase II 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_00116 DNA helicase II 0.29 GEMAOFIL_01442 hypothetical protein — —
Pseudomonas sp. DMC3 0.59 GFF512 DNA helicase II 0.29 GFF2083 Murein hydrolase activator NlpD — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_10055 DNA helicase II 0.29 AO353_16610 peptigoglycan-binding protein LysM — —
Pseudomonas sp. S08-1 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA 0.29 OH686_18180 Murein hydrolase activator NlpD low > 80
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.29 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases low > 40
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_16775 DNA helicase 0.21 OKGIIK_08100 Peptidase M23 low > 53
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS16965 DNA helicase II 0.21 ABZR86_RS06580 peptidoglycan DD-metalloendopeptidase family protein low > 74
Rhodanobacter denitrificans MT42 0.54 LRK55_RS06595 DNA helicase II 0.21 LRK55_RS16390 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS06850 DNA helicase II 0.21 LRK54_RS16665 peptidoglycan DD-metalloendopeptidase family protein 0.54 24
Rhodanobacter sp000427505 FW510-R12 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein 0.20 LRK53_RS12255 peptidoglycan DD-metalloendopeptidase family protein — —
Methylophilus sp. DMC18 0.48 GFF1664 DNA helicase II 0.20 GFF448 Murein hydrolase activator NlpD low > 43
Dechlorosoma suillum PS 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.30 Dsui_1970 metalloendopeptidase-like membrane protein low > 51
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA 0.23 Ac3H11_1786 Lipoprotein NlpD — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS15090 DNA helicase 0.22 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD low > 128
Variovorax sp. OAS795 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein 0.27 ABID97_RS10725 peptidoglycan DD-metalloendopeptidase family protein low > 91
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS02160 DNA-dependent helicase 0.27 HSERO_RS14835 peptidase M23 0.38 20
Variovorax sp. SCN45 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) 0.27 GFF2843 Murein hydrolase activator NlpD low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA 0.24 GFF3881 Lipoprotein NlpD — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein 0.22 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein — —

Not shown: 77 genomes with orthologs for CSW01_01015 only; 1 genomes with orthologs for CSW01_02830 only