Conservation of cofitness between CSW01_00650 and CSW01_02830 in Vibrio cholerae E7946 ATCC 55056

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00650 tyrosine recombinase XerC 1.0 CSW01_02830 murein hydrolase activator NlpD 0.66 16
Rahnella sp. WP5 0.56 EX31_RS15165 tyrosine recombinase XerC 0.41 EX31_RS07830 murein hydrolase activator NlpD 0.40 88
Serratia liquefaciens MT49 0.55 IAI46_00725 tyrosine recombinase XerC 0.38 IAI46_03785 murein hydrolase activator NlpD low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF239 Tyrosine recombinase XerC 0.39 GFF4789 Lipoprotein NlpD — —
Shewanella sp. ANA-3 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.36 Shewana3_1123 peptidase M23B (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.34 SO3433 nlpD lipoprotein NlpD (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.33 Sama_1043 lipoprotein NlpD (RefSeq) 0.41 4
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.29 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases low > 40
Alteromonas macleodii MIT1002 0.45 MIT1002_00157 Tyrosine recombinase XerC 0.37 MIT1002_00626 Murein hydrolase activator NlpD precursor low > 70
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.35 Shew_1212 peptidase M23B (RefSeq) low > 60
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC 0.30 DQ20_RS42265 peptidoglycan DD-metalloendopeptidase family protein low > 101
Methylophilus sp. DMC18 0.40 GFF1535 Tyrosine recombinase XerC 0.20 GFF448 Murein hydrolase activator NlpD low > 43
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC 0.30 DY961_RS14860 peptidoglycan DD-metalloendopeptidase family protein low > 100
Pseudomonas aeruginosa PA14 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.30 IKLFDK_18500 Lipo NlpD/LppB-like protein low > 98
Pseudomonas sp. SVBP6 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.30 COO64_RS19790 peptidoglycan DD-metalloendopeptidase family protein low > 93
Pseudomonas sp. BP01 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.28 JOY50_RS23750 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas putida KT2440 0.39 PP_5230 Tyrosine recombinase XerC 0.28 PP_1622 metallopeptidase, M23B subfamily — —
Pseudomonas sp. S08-1 0.38 OH686_13785 tyrosine recombinase XerC 0.29 OH686_18180 Murein hydrolase activator NlpD low > 80
Pseudomonas sp. DMC3 0.38 GFF370 Tyrosine recombinase XerC 0.29 GFF2083 Murein hydrolase activator NlpD — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS08300 tyrosine recombinase XerC 0.21 LRK55_RS16390 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_09050 recombinase XerC 0.29 AO353_16610 peptigoglycan-binding protein LysM — —
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS02315 tyrosine recombinase XerC 0.20 LRK53_RS12255 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS08535 tyrosine recombinase XerC 0.21 LRK54_RS16665 peptidoglycan DD-metalloendopeptidase family protein low > 59
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC 0.21 OKGIIK_08100 Peptidase M23 low > 53
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.21 ABZR86_RS06580 peptidoglycan DD-metalloendopeptidase family protein low > 74
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC 0.29 GEMAOFIL_01442 hypothetical protein — —
Dechlorosoma suillum PS 0.37 Dsui_0651 tyrosine recombinase XerC 0.30 Dsui_1970 metalloendopeptidase-like membrane protein 0.41 2
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21475 recombinase XerC 0.27 HSERO_RS14835 peptidase M23 0.31 14
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.29 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.22 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein — —
Variovorax sp. SCN45 0.33 GFF4490 Site-specific tyrosine recombinase XerC 0.27 GFF2843 Murein hydrolase activator NlpD 0.78 34
Variovorax sp. OAS795 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.27 ABID97_RS10725 peptidoglycan DD-metalloendopeptidase family protein low > 91
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1995 Tyrosine recombinase XerC 0.23 Ac3H11_1786 Lipoprotein NlpD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF547 Tyrosine recombinase XerC 0.24 GFF3881 Lipoprotein NlpD low > 90
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS00615 recombinase XerC 0.22 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD low > 128

Not shown: 62 genomes with orthologs for CSW01_00650 only; 1 genomes with orthologs for CSW01_02830 only