Conservation of cofitness between CSW01_11705 and CSW01_02500 in Vibrio cholerae E7946 ATCC 55056

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11705 MFS transporter 1.0 CSW01_02500 deoxyribonuclease 0.81 1
Shewanella oneidensis MR-1 0.27 SO3814 ampG protein, putative (NCBI ptt file) 0.58 SO0833 endA endonuclease I (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_0783 major facilitator transporter (RefSeq) 0.56 Shewana3_3443 endonuclease I (RefSeq) low > 73
Shewanella amazonensis SB2B 0.27 Sama_2556 AmpG protein, putative (RefSeq) 0.55 Sama_0576 deoxyribonuclease I (RefSeq) low > 62
Shewanella loihica PV-4 0.26 Shew_2892 major facilitator transporter (RefSeq) 0.55 Shew_3223 deoxyribonuclease I (RefSeq) low > 60
Dickeya dadantii 3937 0.21 DDA3937_RS05620 muropeptide MFS transporter AmpG 0.61 DDA3937_RS18550 deoxyribonuclease I low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_4078 AmpG-related permease 0.47 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_4078 AmpG-related permease 0.47 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas sp. BP01 0.20 JOY50_RS15020 AmpG family muropeptide MFS transporter 0.47 JOY50_RS04250 endonuclease low > 84
Serratia liquefaciens MT49 0.20 IAI46_04990 muropeptide MFS transporter AmpG 0.61 IAI46_21380 deoxyribonuclease I low > 86
Dickeya dianthicola 67-19 0.20 HGI48_RS05665 muropeptide MFS transporter AmpG 0.61 HGI48_RS18485 deoxyribonuclease I low > 71
Escherichia coli Nissle 1917 0.20 ECOLIN_RS02600 muropeptide MFS transporter AmpG 0.61 ECOLIN_RS16385 deoxyribonuclease I low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_03240 Protein AmpG 0.61 OHPLBJKB_00773 Endonuclease-1 0.39 8
Rahnella sp. WP5 0.20 EX31_RS22225 muropeptide MFS transporter AmpG 0.61 EX31_RS02655 deoxyribonuclease I low > 89
Escherichia coli ECRC62 0.20 BNILDI_22705 ampG muropeptide MFS transporter AmpG 0.61 BNILDI_09735 endA deoxyribonuclease I low > 75
Escherichia coli ECOR27 0.20 NOLOHH_01290 ampG muropeptide MFS transporter AmpG 0.61 NOLOHH_11155 endA deoxyribonuclease I low > 76
Escherichia coli BL21 0.20 ECD_00384 muropeptide transporter 0.61 ECD_02775 DNA-specific endonuclease I low > 61
Escherichia coli ECRC100 0.20 OKFHMN_08355 ampG muropeptide MFS transporter AmpG 0.60 OKFHMN_19285 endA deoxyribonuclease I low > 79
Escherichia coli BW25113 0.20 b0433 ampG muropeptide transporter (NCBI) 0.61 b2945 endA DNA-specific endonuclease I (NCBI) low > 76
Escherichia coli ECOR38 0.20 HEPCGN_06970 ampG muropeptide MFS transporter AmpG 0.61 HEPCGN_18590 endA deoxyribonuclease I low > 88
Escherichia coli ECRC101 0.20 MCAODC_27580 ampG muropeptide MFS transporter AmpG 0.60 MCAODC_09805 endA deoxyribonuclease I low > 88
Pseudomonas putida KT2440 0.20 PP_1355 Muropeptide permease AmpG 0.46 PP_2451 extracellular DNA endonuclease low > 96
Escherichia coli ECRC99 0.20 KEDOAH_19610 ampG muropeptide MFS transporter AmpG 0.60 KEDOAH_08855 endA deoxyribonuclease I — —
Escherichia coli ECRC102 0.20 NIAGMN_06410 ampG muropeptide MFS transporter AmpG 0.60 NIAGMN_17050 endA deoxyribonuclease I low > 80
Escherichia coli ECRC98 0.20 JDDGAC_12010 ampG muropeptide MFS transporter AmpG 0.60 JDDGAC_22915 endA deoxyribonuclease I low > 87
Escherichia fergusonii Becca 0.20 EFB2_03624 Anhydromuropeptide permease 0.60 EFB2_00957 Endonuclease-1 low > 86
Enterobacter sp. TBS_079 0.20 MPMX20_01024 Anhydromuropeptide permease 0.63 MPMX20_03803 Endonuclease-1 low > 85
Pseudomonas sp. DMC3 0.20 GFF2134 hypothetical protein 0.50 GFF893 Extracellular deoxyribonuclease low > 89
Dickeya dianthicola ME23 0.20 DZA65_RS05990 muropeptide MFS transporter AmpG 0.62 DZA65_RS19620 deoxyribonuclease I low > 75
Pseudomonas fluorescens SBW25 0.20 PFLU_RS24475 AmpG family muropeptide MFS transporter 0.49 PFLU_RS20395 deoxyribonuclease low > 109
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS24475 AmpG family muropeptide MFS transporter 0.49 PFLU_RS20395 deoxyribonuclease low > 109
Enterobacter asburiae PDN3 0.19 EX28DRAFT_2538 AmpG-like permease 0.62 EX28DRAFT_2983 Endonuclease I low > 76
Pseudomonas sp. SVBP6 0.19 COO64_RS11990 AmpG family muropeptide MFS transporter 0.47 COO64_RS10310 endonuclease low > 93
Pectobacterium carotovorum WPP14 0.19 HER17_RS15870 muropeptide MFS transporter AmpG 0.61 HER17_RS02645 deoxyribonuclease I low > 75
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_4645 AmpG permease 0.48 PfGW456L13_3916 Endonuclease I precursor (EC 3.1.21.1) low > 87
Pantoea sp. MT58 0.19 IAI47_14675 muropeptide MFS transporter AmpG 0.61 IAI47_03625 deoxyribonuclease I low > 76
Pseudomonas simiae WCS417 0.19 PS417_22815 permease 0.49 PS417_18420 deoxyribonuclease low > 88
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_3168 AmpG permease 0.48 Pf1N1B4_6039 Endonuclease I precursor (EC 3.1.21.1) low > 87
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS10520 muropeptide MFS transporter AmpG 0.61 PagCFBP13505_RS16070 deoxyribonuclease I low > 74
Klebsiella michiganensis M5al 0.19 BWI76_RS06500 muropeptide transporter AmpG 0.63 BWI76_RS24065 deoxyribonuclease I low > 92
Pseudomonas sp. RS175 0.19 PFR28_00495 hypothetical protein 0.48 PFR28_02739 Extracellular deoxyribonuclease low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF4348 AmpG permease 0.61 GFF3047 Endonuclease I precursor (EC 3.1.21.1) @ Extracellular deoxyribonuclease Dns (EC 3.1.21.-) low > 78
Klebsiella pneumoniae MKP103 0.19 KDGMDA_14585 muropeptide MFS transporter AmpG 0.63 KDGMDA_04580 deoxyribonuclease I low > 95
Pseudomonas lactucae CFBP13502 0.19 GEMAOFIL_04714 hypothetical protein 0.48 GEMAOFIL_03914 Extracellular deoxyribonuclease low > 93
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_05555 AmpG family muropeptide MFS transporter 0.47 AO356_00985 deoxyribonuclease low > 104
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_16925 AmpG family muropeptide MFS transporter 0.48 AO353_20795 deoxyribonuclease low > 101
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_2971 AmpG permease 0.48 Pf6N2E2_158 Endonuclease I precursor (EC 3.1.21.1) low > 103
Erwinia amylovora T8 0.17 OLJFJH_18000 muropeptide MFS transporter AmpG 0.59 OLJFJH_08580 deoxyribonuclease I low > 58
Erwinia tracheiphila HP pepo 2.2 0.17 IJEDHG_16420 ampG muropeptide MFS transporter AmpG 0.57 IJEDHG_03420 endA deoxyribonuclease I low > 61
Pseudomonas sp. S08-1 0.14 OH686_08200 AmpG permease 0.45 OH686_20125 Endonuclease I precursor low > 80
Pseudomonas segetis P6 0.12 MPMX49_03781 hypothetical protein 0.45 MPMX49_01589 Nuclease NucM low > 75

Not shown: 40 genomes with orthologs for CSW01_11705 only; 2 genomes with orthologs for CSW01_02500 only