Conservation of cofitness between CSW01_08410 and CSW01_01710 in Vibrio cholerae E7946 ATCC 55056

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08410 AcrB/AcrD/AcrF family protein 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 0.45 20
Shewanella amazonensis SB2B 0.59 Sama_0675 AcrB/AcrD/AcrF family transporter (RefSeq) 0.37 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_0466 acriflavin resistance protein (RefSeq) 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) low > 60
Shewanella sp. ANA-3 0.51 Shewana3_3572 acriflavin resistance protein (RefSeq) 0.38 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) low > 73
Rahnella sp. WP5 0.49 EX31_RS02985 efflux RND transporter permease subunit 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor low > 89
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0559 Cation/multidrug efflux pump 0.27 EX28DRAFT_4537 Regulator of sigma D low > 76
Pantoea agglomerans CFBP13505 P0401 0.48 PagCFBP13505_RS07230 efflux RND transporter permease subunit 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor low > 74
Alteromonas macleodii MIT1002 0.48 MIT1002_01561 Swarming motility protein SwrC 0.32 MIT1002_03798 Regulator of sigma D low > 70
Klebsiella michiganensis M5al 0.47 BWI76_RS18515 multidrug transporter AcrB 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor low > 92
Pseudomonas stutzeri RCH2 0.39 Psest_0733 Cation/multidrug efflux pump 0.25 Psest_3743 Regulator of sigma D low > 67
Pseudomonas sp. RS175 0.27 PFR28_02359 Cobalt-zinc-cadmium resistance protein CzcA 0.23 PFR28_04361 Regulator of sigma D low > 88
Pseudomonas aeruginosa PUPa3 0.27 DQ20_RS42530 mexK;inference=COORDINATES multidrug efflux RND transporter permease subunit MexK 0.26 DQ20_RS49965 rsd;go_process=regulation sigma D regulator low > 101
Pseudomonas aeruginosa MRSN321 0.27 DY961_RS14595 mexK;inference=COORDINATES multidrug efflux RND transporter permease subunit MexK 0.26 DY961_RS12155 rsd;go_process=regulation sigma D regulator low > 100
Pseudomonas aeruginosa PA14 0.27 IKLFDK_18770 multidrug efflux RND transporter permease subunit MexK 0.26 IKLFDK_27180 Alginate regulatory protein AlgQ low > 98
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_30 Cation efflux system protein 0.22 Pf1N1B4_2190 Regulator of sigma D low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0346 Acriflavin resistance protein 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0346 Acriflavin resistance protein 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ low > 86
Pseudomonas putida KT2440 0.27 PP_1517 RND efflux transporter 0.22 PP_0191 Transcriptional regulatory protein AlgQ low > 96
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_16365 multidrug transporter AcrB 0.22 AO353_08965 transcriptional regulator low > 101
Pseudomonas sp. BP01 0.26 JOY50_RS26100 efflux RND transporter permease subunit 0.22 JOY50_RS18725 Rsd/AlgQ family anti-sigma factor low > 84
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_27555 multidrug transporter 0.24 AO356_12810 transcriptional regulator low > 104
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_4730 RND efflux transporter 0.23 PfGW456L13_861 Regulator of sigma D low > 87
Pseudomonas sp. S08-1 0.26 OH686_06740 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.26 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD low > 80
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3091 RND efflux transporter 0.24 Pf6N2E2_4435 Regulator of sigma D low > 103
Pseudomonas simiae WCS417 0.26 PS417_06115 multidrug transporter AcrB 0.21 PS417_27505 transcriptional regulator low > 88
Pseudomonas segetis P6 0.26 MPMX49_01634 Multidrug resistance protein MexB 0.27 MPMX49_04516 Regulator of sigma D low > 75
Pseudomonas sp. SVBP6 0.26 COO64_RS19550 efflux RND transporter permease subunit 0.20 COO64_RS01170 Rsd/AlgQ family anti-sigma factor low > 93
Pseudomonas sp. DMC3 0.26 GFF2034 Nickel and cobalt resistance protein CnrA 0.25 GFF353 Regulator of sigma D low > 89
Pseudomonas orientalis W4I3 0.26 QF045_RS08965 efflux RND transporter permease subunit 0.21 QF045_RS01865 sigma D regulator low > 93
Dickeya dianthicola 67-19 0.26 HGI48_RS07915 efflux RND transporter permease subunit 0.20 HGI48_RS01175 sigma D regulator low > 71
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS06185 efflux RND transporter permease subunit 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas fluorescens SBW25 0.26 PFLU_RS06185 efflux RND transporter permease subunit 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_01393 Multidrug export protein AcrF 0.21 GEMAOFIL_05639 Regulator of sigma D low > 96
Enterobacter sp. TBS_079 0.25 MPMX20_02160 Nickel and cobalt resistance protein CnrA 0.29 MPMX20_00218 Regulator of sigma D low > 85
Dickeya dianthicola ME23 0.25 DZA65_RS08510 efflux RND transporter permease subunit 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor low > 75
Klebsiella pneumoniae MKP103 0.25 KDGMDA_24195 MFS transporter 0.29 KDGMDA_10045 sigma D regulator low > 95
Pectobacterium carotovorum WPP14 0.25 HER17_RS07540 efflux RND transporter permease subunit 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor low > 75
Dickeya dadantii 3937 0.25 DDA3937_RS03810 efflux RND transporter permease subunit 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor low > 74
Pantoea sp. MT58 0.23 IAI47_07210 efflux RND transporter permease subunit 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor low > 76
Marinobacter adhaerens HP15 0.23 HP15_1118 transporter, AcrB/D/F family 0.30 HP15_221 anti-RNA polymerase sigma 70 factor low > 73

Not shown: 39 genomes with orthologs for CSW01_08410 only; 19 genomes with orthologs for CSW01_01710 only