| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 1.0 | CSW01_01280 | | GDP-mannose 4,6-dehydratase | 0.88 | 17 |
| Enterobacter sp. TBS_079 | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.82 | MPMX20_03035 | | GDP-mannose 4,6-dehydratase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.83 | GFF3875 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.83 | EX28DRAFT_0502 | | GDP-mannose 4,6-dehydratase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.10 | OHPLBJKB_04266 | | dTDP-glucose 4,6-dehydratase 2 | low | > 74 |
| Rahnella sp. WP5 | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.52 | EX31_RS02865 | | GDP-mannose 4,6-dehydratase | low | > 89 |
| Escherichia coli ECOR38 | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.83 | HEPCGN_03045 | | GDP-mannose 4,6-dehydratase | low | > 88 |
| Erwinia amylovora T8 | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | 0.10 | OLJFJH_12090 | | dTDP-glucose 4 6-dehydratase | — | — |
| Escherichia coli ECRC99 | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.83 | KEDOAH_03710 | | GDP-mannose 4,6-dehydratase | — | — |
| Dickeya dadantii 3937 | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.87 | DDA3937_RS18665 | | GDP-mannose 4,6-dehydratase | — | — |
| Escherichia coli ECRC100 | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.83 | OKFHMN_24440 | | GDP-mannose 4,6-dehydratase | — | — |
| Escherichia coli BL21 | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.83 | ECD_01959 | | GDP-D-mannose dehydratase, NAD(P)-binding | — | — |
| Escherichia coli ECRC62 | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.83 | BNILDI_14585 | | GDP-mannose 4,6-dehydratase | low | > 75 |
| Escherichia coli BW25113 | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.83 | b2053 | gmd | GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.83 | NIAGMN_22385 | | GDP-mannose 4,6-dehydratase | low | > 80 |
| Escherichia coli ECOR27 | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.83 | NOLOHH_15675 | | GDP-mannose 4,6-dehydratase | low | > 76 |
| Escherichia coli ECRC98 | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.83 | JDDGAC_28550 | | GDP-mannose 4,6-dehydratase | — | — |
| Escherichia fergusonii Becca | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.83 | EFB2_01801 | | GDP-mannose 4,6-dehydratase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.82 | ECOLIN_RS12095 | | GDP-mannose 4,6-dehydratase | — | — |
| Escherichia coli ECRC101 | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.83 | MCAODC_20500 | | GDP-mannose 4,6-dehydratase | — | — |
| Pantoea sp. MT58 | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.11 | IAI47_18500 | | dTDP-glucose 4,6-dehydratase | — | — |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.87 | HGI48_RS18595 | | GDP-mannose 4,6-dehydratase | low | > 71 |
| Pantoea agglomerans CFBP13505 P0401 | 0.85 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | 0.46 | PagCFBP13505_RS01140 | | GDP-mannose 4,6-dehydratase | low | > 74 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.87 | DZA65_RS19730 | | GDP-mannose 4,6-dehydratase | — | — |
| Pectobacterium carotovorum WPP14 | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.78 | HER17_RS14540 | | GDP-mannose 4,6-dehydratase | low | > 75 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.40 | OH686_11980 | | GDP-mannose 4,6-dehydratase | — | — |
| Pseudomonas aeruginosa PA14 | 0.70 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | 0.39 | IKLFDK_26150 | | GDP-mannose 4 6-dehydratase | low | > 100 |
| Pseudomonas segetis P6 | 0.69 | MPMX49_01257 | | RNA polymerase-binding transcription factor DksA | 0.43 | MPMX49_00388 | | GDP-mannose 4,6-dehydratase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.69 | GEMAOFIL_04926 | | RNA polymerase-binding transcription factor DksA | 0.46 | GEMAOFIL_04278 | | GDP-mannose 4,6-dehydratase | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.68 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.39 | Pf1N1B4_1965 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | — | — |
| Pseudomonas stutzeri RCH2 | 0.68 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.83 | Psest_1818 | | GDP-mannose 4,6-dehydratase | — | — |
| Pseudomonas sp. RS175 | 0.68 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.40 | PFR28_04554 | | GDP-mannose 4,6-dehydratase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_16095 | | molecular chaperone DnaK | 0.40 | AO356_11835 | | GDP-mannose 4,6-dehydratase | low | > 104 |
| Pseudomonas sp. DMC3 | 0.68 | GFF4034 | | RNA polymerase-binding transcription factor DksA | 0.40 | GFF545 | | GDP-mannose 4,6-dehydratase | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_14420 | | molecular chaperone DnaK | 0.42 | AO353_10245 | | GDP-mannose 4,6-dehydratase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.45 | Psyr_0916 | | GDP-mannose 4,6-dehydratase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.45 | Psyr_0916 | | GDP-mannose 4,6-dehydratase | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.40 | PfGW456L13_2338 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.77 | PFLU_RS17890 | | GDP-mannose 4,6-dehydratase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.77 | PFLU_RS17890 | | GDP-mannose 4,6-dehydratase | low | > 109 |
| Pseudomonas sp. SVBP6 | 0.67 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | 0.45 | COO64_RS06615 | gmd | GDP-mannose 4,6-dehydratase | low | > 93 |
| Pseudomonas putida KT2440 | 0.64 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.46 | PP_1799 | | GDP-mannose 4,6-dehydratase | low | > 96 |
| Dechlorosoma suillum PS | 0.56 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.71 | Dsui_0085 | | GDP-mannose 4,6-dehydratase | low | > 51 |
| Agrobacterium fabrum C58 | 0.35 | Atu1359 | | dnaK deletion suppressor protein | 0.59 | Atu4789 | | GDP-mannose 4,6-dehydratase | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.43 | A4249_RS12980 | | GDP-mannose 4,6-dehydratase | low | > 48 |
| Caulobacter crescentus NA1000 | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | 0.63 | CCNA_00472 | | GDP-mannose 4,6 dehydratase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | 0.63 | CCNA_00472 | | GDP-mannose 4,6 dehydratase | low | > 67 |
| Xanthobacter sp. DMC5 | 0.33 | GFF1254 | | RNA polymerase-binding transcription factor DksA | 0.10 | GFF1115 | | dTDP-glucose 4,6-dehydratase 2 | — | — |
| Sphingobium sp. HT1-2 | 0.33 | GFF2254 | | DksA family protein PA5536 (no Zn-finger) | 0.11 | GFF4227 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | low | > 95 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.81 | PGA1_65p00310 | | GDP-mannose 4,6-dehydratase Gmd | low | > 62 |
| Bosea sp. OAE506 | 0.31 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.44 | ABIE41_RS02910 | | GDP-mannose 4,6-dehydratase | low | > 77 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.71 | ABCV34_RS12935 | | GDP-mannose 4,6-dehydratase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.45 | TX73_020470 | | GDP-mannose 4,6-dehydratase | low | > 86 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.63 | Rru_A0253 | | GDP-mannose 4,6-dehydratase (NCBI) | low | > 58 |
Not shown: 19 genomes with orthologs for CSW01_03155 only; 34 genomes with orthologs for CSW01_01280 only