Conservation of cofitness between BNILDI_10480 and BNILDI_08455 in Escherichia coli ECRC62

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC62 1.0 BNILDI_10480 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.0 BNILDI_08455 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.82 3
Escherichia coli BW25113 1.00 b2812 ygdL hypothetical protein (NCBI) 1.00 b0058 rluA pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00919 tRNA threonylcarbamoyladenosine dehydratase 1.00 OHPLBJKB_03600 Ribosomal large subunit pseudouridine synthase A low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11975 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 NOLOHH_03150 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Escherichia coli BL21 1.00 ECD_02663 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA 1.00 ECD_00060 dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent low > 61
Escherichia coli ECOR38 1.00 HEPCGN_19350 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 HEPCGN_08795 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 87
Escherichia fergusonii Becca 0.99 EFB2_01105 tRNA threonylcarbamoyladenosine dehydratase 1.00 EFB2_03987 Dual-specificity RNA pseudouridine synthase RluA low > 86
Escherichia coli ECRC99 0.99 KEDOAH_08035 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.99 KEDOAH_17350 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15670 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 ECOLIN_RS00310 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 55
Escherichia coli ECRC100 0.98 OKFHMN_20095 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.99 OKFHMN_10805 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.65 25
Escherichia coli ECRC98 0.98 JDDGAC_23760 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.99 JDDGAC_14400 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Escherichia coli ECRC102 0.98 NIAGMN_17865 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.99 NIAGMN_08655 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC101 0.98 MCAODC_10620 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.99 MCAODC_01320 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.59 25
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4870 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway 0.96 GFF184 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_03675 tRNA threonylcarbamoyladenosine dehydratase 0.90 MPMX20_00752 Dual-specificity RNA pseudouridine synthase RluA low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2888 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.91 EX28DRAFT_3650 pseudouridine synthase, RluA family low > 76
Klebsiella michiganensis M5al 0.89 BWI76_RS22975 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.94 BWI76_RS04565 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA low > 92
Serratia liquefaciens MT49 0.84 IAI46_20360 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.75 IAI46_03270 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.48 29
Rahnella sp. WP5 0.84 EX31_RS13130 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.70 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 89
Erwinia tracheiphila SCR3 0.83 LU632_RS06230 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.82 LU632_RS02800 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Pantoea sp. MT58 0.83 IAI47_04005 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.86 IAI47_16060 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS05030 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.77 DDA3937_RS18240 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 74
Pectobacterium carotovorum WPP14 0.80 HER17_RS16435 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.78 HER17_RS02985 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS05035 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.77 HGI48_RS18175 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS05375 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.78 DZA65_RS19315 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_11750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.52 CSW01_12700 RNA pseudouridine synthase low > 62
Shewanella amazonensis SB2B 0.61 Sama_0546 HesA/MoeB/ThiF family protein (RefSeq) 0.59 Sama_0606 pseudouridylate synthase (RefSeq) low > 62
Shewanella loihica PV-4 0.61 Shew_3251 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.61 Shew_0783 pseudouridylate synthase (RefSeq) — —
Shewanella sp. ANA-3 0.58 Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.62 Shewana3_0799 ribosomal large subunit pseudouridine synthase A (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.54 MIT1002_01936 Molybdopterin-synthase adenylyltransferase 0.56 MIT1002_00658 Ribosomal large subunit pseudouridine synthase A low > 70
Pseudomonas putida KT2440 0.53 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) 0.47 PP_1731 23S rRNA (746) and tRNA (32) pseudouridine synthase low > 96
Pseudomonas stutzeri RCH2 0.51 Psest_1619 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.45 Psest_2948 pseudouridine synthase, RluA family low > 67
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.46 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas sp. S08-1 0.51 OH686_06545 HesA/MoeB/ThiF family protein 0.47 OH686_19760 LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase low > 80
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4719 HesA/MoeB/ThiF family protein related to EC-YgdL 0.45 PfGW456L13_4194 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.46 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_06085 thiamine biosynthesis protein ThiF 0.46 AO356_19405 pseudouridine synthase low > 104
Pseudomonas simiae WCS417 0.50 PS417_06165 thiamine biosynthesis protein ThiF 0.47 PS417_19475 pseudouridine synthase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.47 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.47 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_3074 HesA/MoeB/ThiF family protein related to EC-YgdL 0.45 Pf1N1B4_3753 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.50 PFR28_00387 tRNA threonylcarbamoyladenosine dehydratase 0.46 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA low > 88
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_16420 thiamine biosynthesis protein ThiF 0.46 AO353_02385 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_3081 HesA/MoeB/ThiF family protein related to EC-YgdL 0.46 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 103
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0922 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.48 B158DRAFT_1514 Pseudouridylate synthases, 23S RNA-specific low > 40
Dechlorosoma suillum PS 0.46 Dsui_1346 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis 0.47 Dsui_3205 pseudouridine synthase, RluA family low > 51
Acinetobacter radioresistens SK82 0.43 MPMX26_00481 tRNA threonylcarbamoyladenosine dehydratase 0.42 MPMX26_02477 Dual-specificity RNA pseudouridine synthase RluA low > 36
Acidovorax sp. GW101-3H11 0.36 Ac3H11_2482 Probable HesA/MoeB/ThiF family protein 0.38 Ac3H11_174 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF4538 Probable HesA/MoeB/ThiF family protein 0.44 GFF3559 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 90
Variovorax sp. SCN45 0.33 GFF289 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.37 GFF7036 LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) low > 127

Not shown: 26 genomes with orthologs for BNILDI_10480 only; 3 genomes with orthologs for BNILDI_08455 only