Conservation of cofitness between Atu3290 and Atu3289 in Agrobacterium fabrum C58

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3290 phosphomethylpyrimidine kinase 1.0 Atu3289 thiamine-phosphate pyrophosphorylase 0.85 6
Xanthobacter sp. DMC5 0.55 GFF1029 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.22 GFF3694 Thiamine-phosphate synthase — —
Serratia liquefaciens MT49 0.50 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.16 IAI46_01315 thiamine phosphate synthase low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_0215 phosphomethylpyrimidine kinase 0.19 Echvi_0216 thiamine-phosphate pyrophosphorylase low > 79
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12250 phosphomethylpyrimidine kinase 0.16 BPHYT_RS17770 thiamine-phosphate pyrophosphorylase — —
Bacteroides thetaiotaomicron VPI-5482 0.44 BT0790 phosphomethylpyrimidine kinase (NCBI ptt file) 0.22 BT0652 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) 0.35 73
Rhizobium sp. OAE497 0.43 ABIE40_RS25930 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.28 ABIE40_RS25925 thiamine phosphate synthase low > 107
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS06820 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.20 HMPREF1058_RS03290 thiamine phosphate synthase 0.84 7
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS20615 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.20 ABI39_RS17750 thiamine phosphate synthase 0.94 3
Cellulophaga baltica 18 0.42 M666_RS03830 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.19 M666_RS10610 thiamine phosphate synthase low > 67
Bacteroides ovatus ATCC 8483 0.42 BACOVA_02530 phosphomethylpyrimidine kinase 0.21 BACOVA_02360 thiamine-phosphate diphosphorylase 0.89 5
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14705 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.20 HMPREF1181_RS14675 thiamine phosphate synthase low > 56
Methylophilus sp. DMC18 0.41 GFF892 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.23 GFF2072 Thiamine-phosphate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS24160 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.19 CA265_RS20175 thiamine-phosphate diphosphorylase low > 88
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS03825 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.18 LRK53_RS01840 thiamine phosphate synthase low > 59
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS08810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.20 ABZR88_RS08830 thiamine phosphate synthase low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0931 thiD phosphomethylpyrimidine kinase (TIGR) 0.31 DVU2362 thiE-2 thiamine-phosphate pyrophosphorylase (TIGR) — —
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS00760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.24 ABZR86_RS17410 thiamine phosphate synthase — —
Lysobacter sp. OAE881 0.33 ABIE51_RS07970 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.20 ABIE51_RS17410 thiamine phosphate synthase — —
Fusobacterium nucleatum SB010 0.33 HUW76_10300 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.24 HUW76_10295 thiamine phosphate synthase low > 35
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_1376 phosphomethylpyrimidine kinase (RefSeq) 0.29 DvMF_3007 thiE thiamine-phosphate pyrophosphorylase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_03835 Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.22 OKGIIK_17095 Thiamine-phosphate synthase low > 53
Pseudomonas aeruginosa PA14 0.27 IKLFDK_20515 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.21 IKLFDK_20520 Thiamine-phosphate synthase low > 100
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_15435 hydrogenase 0.18 AO356_15430 thiamine-phosphate pyrophosphorylase 0.32 15
Pseudomonas simiae WCS417 0.27 PS417_24600 hydrogenase 0.20 PS417_24605 thiamine-phosphate pyrophosphorylase 0.59 8
Pseudomonas sp. SVBP6 0.26 COO64_RS15485 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.20 COO64_RS15490 thiE thiamine phosphate synthase 0.62 55
Pseudomonas sp. S08-1 0.26 OH686_09185 Hydroxymethylpyrimidine phosphate kinase ThiD 0.20 OH686_09190 Thiamin-phosphate pyrophosphorylase 0.90 2
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_06350 hydrogenase 0.20 AO353_06355 thiamine-phosphate pyrophosphorylase 0.58 7
Pseudomonas fluorescens SBW25 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 PFLU_RS26535 thiamine phosphate synthase 0.83 25
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 PFLU_RS26535 thiamine phosphate synthase 0.93 2
Mycobacterium tuberculosis H37Rv 0.26 Rv0422c Probable phosphomethylpyrimidine kinase ThiD (HMP-phosphate kinase) (HMP-P kinase) 0.19 Rv0414c Thiamine-phosphate pyrophosphorylase ThiE (TMP pyrophosphorylase) (TMP-PPASE) (thiamine-phosphate synthase) — —
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.18 PfGW456L13_1384 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.39 32
Pseudomonas sp. DMC3 0.26 GFF3905 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.18 GFF3904 Thiamine-phosphate synthase low > 89
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.19 Psyr_4341 thiamine-phosphate diphosphorylase 0.92 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.19 Psyr_4341 thiamine-phosphate diphosphorylase 0.88 2
Pseudomonas stutzeri RCH2 0.26 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 Psest_0536 thiamine-phosphate pyrophosphorylase 0.60 4
Pseudomonas segetis P6 0.25 MPMX49_01077 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 MPMX49_01076 Thiamine-phosphate synthase 0.42 31
Pseudomonas sp. RS175 0.24 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 PFR28_03844 Thiamine-phosphate synthase 0.91 3
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.19 Pf1N1B4_2717 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.19 Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.41 2
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_05068 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.19 GEMAOFIL_05069 Thiamine-phosphate synthase low > 93
Phaeobacter inhibens DSM 17395 0.19 PGA1_c09030 phosphomethylpyrimidine kinase ThiD 0.19 PGA1_c09050 thiamine-phosphate pyrophosphorylase ThiE 0.84 5

Not shown: 66 genomes with orthologs for Atu3290 only; 5 genomes with orthologs for Atu3289 only