Conservation of cofitness between Atu4196 and Atu3029 in Agrobacterium fabrum C58

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4196 hypothetical protein 1.0 Atu3029 glucarate dehydratase 0.18 6
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS02295 galactonate dehydratase 0.23 QEN71_RS32495 glucarate dehydratase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04215 galactonate dehydratase 0.24 H281DRAFT_03815 D-glucarate dehydratase low > 103
Paraburkholderia graminis OAS925 0.25 ABIE53_003454 galactonate dehydratase 0.49 ABIE53_001536 glucarate dehydratase low > 113
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS16405 galactonate dehydratase [EC: 4.2.1.6] (from data) 0.50 BPHYT_RS31145 glucarate dehydratase low > 109
Acidovorax sp. GW101-3H11 0.24 Ac3H11_600 Galactonate dehydratase (EC 4.2.1.6) 0.25 Ac3H11_338 Glucarate dehydratase (EC 4.2.1.40) low > 79
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS05150 galactonate dehydratase 0.50 HSERO_RS05730 glucarate dehydratase low > 78
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_398 Galactonate dehydratase (EC 4.2.1.6) 0.47 Pf1N1B4_5057 mandelate racemase family protein Pfl_3283 low > 87
Pseudomonas sp. RS175 0.23 PFR28_02985 D-galactonate dehydratase 0.46 PFR28_01799 Glucarate dehydratase low > 88
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_20290 galactonate dehydratase 0.45 AO356_25015 glucarate dehydratase low > 104
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_5977 Galactonate dehydratase (EC 4.2.1.6) 0.45 Pf6N2E2_692 Glucarate dehydratase (EC 4.2.1.40) low > 103
Pantoea sp. MT58 0.23 IAI47_00045 galactonate dehydratase 0.24 IAI47_04090 glucarate dehydratase low > 76
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_2128 Galactonate dehydratase (EC 4.2.1.6) 0.24 PfGW456L13_2480 Glucarate dehydratase (EC 4.2.1.40) low > 87
Pseudomonas fluorescens SBW25 0.23 PFLU_RS00160 galactonate dehydratase 0.47 PFLU_RS11245 glucarate dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS00160 galactonate dehydratase 0.47 PFLU_RS11245 glucarate dehydratase low > 109
Pseudomonas simiae WCS417 0.23 PS417_00165 galactonate dehydratase 0.24 PS417_18895 glucarate dehydratase low > 88
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS01445 galactonate dehydratase 0.25 ABZR87_RS10315 glucarate dehydratase low > 80
Rahnella sp. WP5 0.23 EX31_RS10320 galactonate dehydratase 0.24 EX31_RS03150 glucarate dehydratase low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_1989 galactonate dehydratase 0.48 Psyr_2716 Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme low > 86
Ralstonia solanacearum PSI07 0.23 RPSI07_RS11425 galactonate dehydratase 0.27 RPSI07_RS18880 glucarate dehydratase low > 81
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_1989 galactonate dehydratase 0.48 Psyr_2716 Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme low > 86
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.3080.1 Galactonate dehydratase (EC 4.2.1.6) 0.26 Xcc-8004.1208.1 Glucarate dehydratase (EC 4.2.1.40) low > 74
Ralstonia solanacearum GMI1000 0.23 RS_RS13765 D-galactonate dehydratase 0.26 RS_RS05360 glucarate dehydratase low > 80
Enterobacter sp. TBS_079 0.22 MPMX20_00011 D-galactonate dehydratase 0.25 MPMX20_03657 Glucarate dehydratase low > 85
Escherichia coli ECOR38 0.22 HEPCGN_13775 dgoD galactonate dehydratase 0.24 HEPCGN_19485 gudD glucarate dehydratase low > 85
Escherichia fergusonii Becca 0.22 EFB2_00011 D-galactonate dehydratase 0.24 EFB2_01130 Glucarate dehydratase low > 86
Escherichia coli ECRC62 0.22 BNILDI_04320 dgoD galactonate dehydratase 0.24 BNILDI_10615 gudD glucarate dehydratase — —
Escherichia coli BW25113 0.22 b4478 dgoD galactonate dehydratase (NCBI) 0.24 b2787 gudD (D)-glucarate dehydratase 1 (NCBI) low > 76
Escherichia coli Nissle 1917 0.22 ECOLIN_RS21265 galactonate dehydratase 0.22 ECOLIN_RS15535 enolase C-terminal domain-like protein low > 52
Escherichia coli BL21 0.22 ECD_03575 D-galactonate dehydratase 0.24 ECD_02632 D-glucarate dehydratase 1 low > 60
Escherichia coli ECOR27 0.22 NOLOHH_07210 dgoD galactonate dehydratase 0.24 NOLOHH_12110 gudD glucarate dehydratase low > 57
Enterobacter asburiae PDN3 0.22 EX28DRAFT_3979 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 0.25 EX28DRAFT_2868 glucarate dehydratase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_00011 D-galactonate dehydratase 0.24 OHPLBJKB_00944 Glucarate dehydratase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF1765 Galactonate dehydratase (EC 4.2.1.6) 0.25 GFF4841 Glucarate dehydratase (EC 4.2.1.40) low > 78
Azospirillum sp. SherDot2 0.22 MPMX19_03902 D-galactonate dehydratase 0.24 MPMX19_02890 Glucarate dehydratase low > 112
Klebsiella michiganensis M5al 0.22 BWI76_RS27935 galactonate dehydratase 0.24 BWI76_RS22825 glucarate dehydratase low > 92
Dickeya dianthicola 67-19 0.22 HGI48_RS06940 galactonate dehydratase 0.24 HGI48_RS17100 glucarate dehydratase low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS07285 galactonate dehydratase 0.24 DZA65_RS18175 glucarate dehydratase low > 75
Pectobacterium carotovorum WPP14 0.21 HER17_RS07505 mandelate racemase/muconate lactonizing enzyme family protein 0.23 HER17_RS04085 glucarate dehydratase low > 75

Not shown: 10 genomes with orthologs for Atu4196 only; 17 genomes with orthologs for Atu3029 only