Conservation of cofitness between Atu2722 and Atu0977 in Agrobacterium fabrum C58

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2722 porin 1.0 Atu0977 serine protease DO-like protease 0.52 6
Sinorhizobium meliloti 1021 0.68 SMc00354 hypothetical protein 0.67 SMc02365 protease precursor protein — —
Rhizobium sp. OAE497 0.65 ABIE40_RS11645 OmpA family protein 0.67 ABIE40_RS05695 Do family serine endopeptidase low > 107
Pseudomonas stutzeri RCH2 0.42 Psest_3218 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.28 Psest_3096 periplasmic serine protease, Do/DeqQ family — —
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_00201 outer membrane protein 0.31 CCNA_02846 DegP/HtrA-family serine protease low > 67
Caulobacter crescentus NA1000 0.41 CCNA_00201 outer membrane protein 0.31 CCNA_02846 DegP/HtrA-family serine protease low > 66
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.3483.1 Outer membrane protein A precursor 0.26 Xcc-8004.3679.1 Serine protease precursor MucD/AlgY associated with sigma factor RpoE low > 74
Shewanella loihica PV-4 0.41 Shew_0908 OmpA/MotB domain-containing protein (RefSeq) 0.25 Shew_3296 protease Do (RefSeq) low > 60
Escherichia coli BL21 0.40 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein 0.26 ECD_00160 serine endoprotease (protease Do), membrane-associated low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF459 Outer membrane protein A precursor 0.27 GFF60 HtrA protease/chaperone protein low > 78
Escherichia fergusonii Becca 0.40 EFB2_00255 putative lipoprotein YiaD 0.27 EFB2_03883 Periplasmic serine endoprotease DegP low > 86
Enterobacter asburiae PDN3 0.40 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.27 EX28DRAFT_3750 periplasmic serine protease, Do/DeqQ family low > 76
Klebsiella michiganensis M5al 0.40 BWI76_RS26935 OmpA family lipoprotein 0.27 BWI76_RS25365 serine endoprotease DegQ low > 92
Enterobacter sp. TBS_079 0.39 MPMX20_00182 putative lipoprotein YiaD 0.27 MPMX20_00847 Periplasmic serine endoprotease DegP low > 85
Escherichia coli ECOR38 0.39 HEPCGN_14915 yiaD OmpA family lipoprotein 0.27 HEPCGN_08205 degP serine endoprotease DegP low > 85
Escherichia coli ECRC101 0.39 OKFHMN_16025 yiaD OmpA family lipoprotein 0.26 OKFHMN_10255 degP serine endoprotease DegP — —
Escherichia coli ECRC98 0.39 JDDGAC_19655 yiaD OmpA family lipoprotein 0.26 JDDGAC_13850 degP serine endoprotease DegP — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00154 putative lipoprotein YiaD 0.27 OHPLBJKB_03501 Periplasmic serine endoprotease DegP low > 73
Escherichia coli ECRC99 0.39 KEDOAH_12125 yiaD OmpA family lipoprotein 0.26 KEDOAH_17900 degP serine endoprotease DegP — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS20325 OmpA family lipoprotein 0.27 ECOLIN_RS00895 serine endoprotease DegP low > 52
Escherichia coli ECRC101 0.39 MCAODC_06540 yiaD OmpA family lipoprotein 0.26 MCAODC_00770 degP serine endoprotease DegP — —
Escherichia coli ECRC62 0.39 BNILDI_03575 yiaD OmpA family lipoprotein 0.26 BNILDI_09070 degP serine endoprotease DegP — —
Escherichia coli ECOR27 0.39 NOLOHH_07970 yiaD OmpA family lipoprotein 0.26 NOLOHH_02600 degP serine endoprotease DegP low > 57
Escherichia coli BW25113 0.39 b3552 yiaD predicted outer membrane lipoprotien (NCBI) 0.26 b0161 degP serine endoprotease (protease Do), membrane-associated (NCBI) low > 76
Escherichia coli ECRC102 0.39 NIAGMN_13785 yiaD OmpA family lipoprotein 0.26 NIAGMN_08105 degP serine endoprotease DegP — —
Shewanella amazonensis SB2B 0.39 Sama_3096 OmpA family protein (RefSeq) 0.25 Sama_3073 serine protease (RefSeq) 0.24 36
Pantoea sp. MT58 0.38 IAI47_00140 OmpA family lipoprotein 0.26 IAI47_17260 serine endoprotease DegQ low > 76
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS13240 OmpA family protein 0.29 A4249_RS10815 Do family serine endopeptidase low > 48
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor 0.28 PfGW456L13_4513 HtrA protease/chaperone protein low > 87
Pseudomonas sp. RS175 0.36 PFR28_00255 putative lipoprotein YiaD 0.28 PFR28_00693 Periplasmic serine endoprotease DegP low > 88
Serratia liquefaciens MT49 0.36 IAI46_00110 OmpA family lipoprotein 0.26 IAI46_22390 serine endoprotease DegQ low > 86
Rahnella sp. WP5 0.36 EX31_RS05890 OmpA family lipoprotein 0.26 EX31_RS03170 serine endoprotease DegP low > 89
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1005 OmpA/MotB 0.28 Psyr_3955 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF low > 86
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5327 Outer membrane protein assembly factor YaeT precursor 0.28 Pf6N2E2_2753 HtrA protease/chaperone protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2964 Outer membrane protein assembly factor YaeT precursor 0.28 Pf1N1B4_3326 HtrA protease/chaperone protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1005 OmpA/MotB 0.28 Psyr_3955 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF low > 86
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_17015 cell envelope biogenesis protein OmpA 0.28 AO356_04560 serine peptidase low > 104
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_15165 cell envelope biogenesis protein OmpA 0.28 AO353_17640 serine peptidase low > 101
Pseudomonas simiae WCS417 0.35 PS417_04565 cell envelope biogenesis protein OmpA 0.27 PS417_07135 serine peptidase — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS04630 OmpA family lipoprotein 0.28 PFLU_RS07245 DegQ family serine endoprotease low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS04630 OmpA family lipoprotein 0.28 PFLU_RS07245 DegQ family serine endoprotease low > 109
Acinetobacter radioresistens SK82 0.32 MPMX26_02417 putative lipoprotein YiaD 0.23 MPMX26_02161 Periplasmic pH-dependent serine endoprotease DegQ low > 36
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_06045 lipoprotein 0.26 CSW01_03020 serine endoprotease DegQ low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_14415 hypothetical protein 0.23 CA264_08245 deoxyribonuclease HsdR low > 74

Not shown: 8 genomes with orthologs for Atu2722 only; 35 genomes with orthologs for Atu0977 only