Conservation of cofitness between b0752 and b3203 in Escherichia coli BW25113

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0752 zitB zinc transporter ZitB (NCBI) 1.0 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) 0.22 19
Escherichia coli ECRC99 1.00 KEDOAH_21215 zitB CDF family zinc transporter ZitB 1.00 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECOR38 1.00 HEPCGN_01525 zitB CDF family zinc transporter ZitB 1.00 HEPCGN_16810 Ribosome hibernation promoting factor low > 85
Escherichia coli ECRC62 1.00 BNILDI_21175 zitB CDF family zinc transporter ZitB 1.00 BNILDI_01800 Ribosome hibernation promoting factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02961 Zinc transporter ZitB 1.00 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECRC101 1.00 OKFHMN_06750 zitB CDF family zinc transporter ZitB 1.00 OKFHMN_17935 Ribosome hibernation promoting factor — —
Escherichia coli ECRC98 1.00 JDDGAC_10405 zitB CDF family zinc transporter ZitB 1.00 JDDGAC_21560 Ribosome hibernation promoting factor — —
Escherichia coli ECRC102 1.00 NIAGMN_04800 zitB CDF family zinc transporter ZitB 1.00 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli ECRC101 1.00 MCAODC_25970 zitB CDF family zinc transporter ZitB 1.00 MCAODC_08455 Ribosome hibernation promoting factor — —
Escherichia coli ECOR27 1.00 NOLOHH_23180 zitB CDF family zinc transporter ZitB 1.00 NOLOHH_09735 Ribosome hibernation promoting factor low > 57
Escherichia coli BL21 1.00 ECD_00705 zinc efflux system 1.00 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 60
Escherichia fergusonii Becca 1.00 EFB2_03354 Zinc transporter ZitB 1.00 EFB2_00620 Ribosome hibernation promoting factor low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF6 Cobalt-zinc-cadmium resistance protein CzcD 0.95 GFF2947 Ribosome hibernation protein YhbH — —
Enterobacter sp. TBS_079 0.76 MPMX20_01379 Zinc transporter ZitB 0.93 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2243 cation diffusion facilitator family transporter 0.93 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Klebsiella michiganensis M5al 0.71 BWI76_RS08590 zinc transporter ZitB 0.91 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Dickeya dadantii 3937 0.65 DDA3937_RS06555 CDF family zinc transporter ZitB 0.84 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Rahnella sp. WP5 0.63 EX31_RS23535 CDF family zinc transporter ZitB 0.82 EX31_RS12395 ribosome hibernation promoting factor low > 89
Pantoea sp. MT58 0.63 IAI47_13625 CDF family zinc transporter ZitB 0.82 IAI47_17190 ribosome hibernation promoting factor low > 76
Serratia liquefaciens MT49 0.62 IAI46_06390 CDF family zinc transporter ZitB 0.80 IAI46_22475 ribosome hibernation promoting factor low > 86
Pectobacterium carotovorum WPP14 0.59 HER17_RS14810 CDF family zinc transporter ZitB 0.78 HER17_RS20065 ribosome hibernation promoting factor low > 75
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.3684.1 Cobalt-zinc-cadmium resistance protein CzcD 0.39 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1905 cation diffusion facilitator family transporter 0.66 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Pseudomonas putida KT2440 0.35 PP_0026 putative cobalt/cadmium/zinc exporter 0.56 PP_0951 Ribosome hibernation promoting factor low > 96
Variovorax sp. SCN45 0.33 GFF4691 Cobalt/zinc/cadmium resistance protein CzcD 0.43 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Rhodanobacter denitrificans MT42 0.32 LRK55_RS17315 cation diffusion facilitator family transporter 0.43 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_06285 Cation diffusion facilitator family transporter 0.42 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS01630 cation diffusion facilitator family transporter 0.43 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Acinetobacter radioresistens SK82 0.32 MPMX26_02831 Metal cation efflux system protein CzcD 0.30 MPMX26_02591 Ribosome hibernation promoting factor — —
Dechlorosoma suillum PS 0.31 Dsui_3453 cation diffusion facilitator family transporter 0.48 Dsui_0703 ribosomal subunit interface protein low > 51
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS03455 cation transporter 0.50 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.30 PFLU_RS03455 cation transporter 0.50 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS07885 cation diffusion facilitator family transporter 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Pseudomonas stutzeri RCH2 0.26 Psest_0619 cation diffusion facilitator family transporter 0.53 Psest_3314 ribosomal subunit interface protein low > 67
Marinobacter adhaerens HP15 0.26 HP15_163 cation efflux family protein 0.61 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Lysobacter sp. OAE881 0.23 ABIE51_RS06930 cation diffusion facilitator family transporter 0.38 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Alteromonas macleodii MIT1002 0.21 MIT1002_02056 Cadmium, cobalt and zinc/H(+)-K(+) antiporter 0.62 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_26685 cobalt efflux pump (from data) 0.53 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_4470 Cobalt-zinc-cadmium resistance protein CzcD 0.53 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_3547 Cobalt-zinc-cadmium resistance protein CzcD 0.52 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1506 Cation efflux protein 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1506 Cation efflux protein 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF1127 Cobalt-zinc-cadmium resistance protein CzcD 0.38 GFF2612 Ribosome hibernation protein YhbH low > 90
Cupriavidus basilensis FW507-4G11 0.13 RR42_RS21665 cobalt transporter 0.40 RR42_RS02080 ribosome hibernation promoting factor low > 128
Shewanella loihica PV-4 0.12 Shew_2043 cation diffusion facilitator family transporter (RefSeq) 0.60 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Variovorax sp. OAS795 0.11 ABID97_RS24870 CDF family Co(II)/Ni(II) efflux transporter DmeF 0.43 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91

Not shown: 18 genomes with orthologs for b0752 only; 27 genomes with orthologs for b3203 only