Conservation of cofitness between b3034 and b2903 in Escherichia coli BW25113

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3034 nudF ADP-ribose pyrophosphatase (NCBI) 1.0 b2903 gcvP glycine dehydrogenase (NCBI) 0.27 8
Escherichia coli ECRC98 1.00 JDDGAC_22445 nudF ADP-ribose diphosphatase 1.00 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia fergusonii Becca 1.00 EFB2_00774 ADP-ribose pyrophosphatase 0.99 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS17510 ADP-ribose diphosphatase 1.00 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 52
Escherichia coli ECRC102 1.00 NIAGMN_16575 nudF ADP-ribose diphosphatase 1.00 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC101 1.00 OKFHMN_18810 nudF ADP-ribose diphosphatase 1.00 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC62 1.00 BNILDI_00900 nudF ADP-ribose diphosphatase 1.00 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC101 1.00 MCAODC_09325 nudF ADP-ribose diphosphatase 1.00 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC99 1.00 KEDOAH_09335 nudF ADP-ribose diphosphatase 1.00 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECOR38 1.00 HEPCGN_17685 nudF ADP-ribose diphosphatase 1.00 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 85
Escherichia coli BL21 1.00 ECD_02906 ADP-ribose pyrophosphatase 1.00 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 60
Escherichia coli ECOR27 1.00 NOLOHH_10615 nudF ADP-ribose diphosphatase 0.99 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00669 ADP-ribose pyrophosphatase 1.00 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) low > 73
Enterobacter sp. TBS_079 0.91 MPMX20_03881 ADP-ribose pyrophosphatase 0.89 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3072 nudix-type nucleoside diphosphatase, YffH/AdpP family 0.88 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF3148 ADP-ribose pyrophosphatase (EC 3.6.1.13) 0.92 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 78
Klebsiella michiganensis M5al 0.86 BWI76_RS24395 ADP-ribose diphosphatase 0.89 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Serratia liquefaciens MT49 0.82 IAI46_21940 ADP-ribose diphosphatase 0.82 IAI46_20850 aminomethyl-transferring glycine dehydrogenase low > 86
Rahnella sp. WP5 0.80 EX31_RS08095 ADP-ribose diphosphatase 0.81 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Dickeya dianthicola ME23 0.77 DZA65_RS01715 ADP-ribose diphosphatase 0.80 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Pantoea sp. MT58 0.77 IAI47_03140 ADP-ribose diphosphatase 0.82 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Dickeya dianthicola 67-19 0.77 HGI48_RS01640 ADP-ribose diphosphatase 0.80 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS01745 ADP-ribose diphosphatase 0.80 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Erwinia tracheiphila SCR3 0.74 LU632_RS20630 nudF ADP-ribose diphosphatase 0.81 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.72 HER17_RS19820 ADP-ribose diphosphatase 0.80 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Shewanella amazonensis SB2B 0.58 Sama_3047 ADP-ribose diphosphatase (RefSeq) 0.68 Sama_2719 glycine dehydrogenase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_12330 ADP-ribose diphosphatase 0.58 CSW01_15330 glycine dehydrogenase (decarboxylating) low > 62
Shewanella loihica PV-4 0.56 Shew_0545 ADP-ribose diphosphatase (RefSeq) 0.66 Shew_3062 glycine dehydrogenase (RefSeq) 0.40 17
Alteromonas macleodii MIT1002 0.55 MIT1002_00671 ADP-ribose pyrophosphatase 0.68 MIT1002_02971 Glycine dehydrogenase [decarboxylating] low > 70
Shewanella sp. ANA-3 0.54 Shewana3_0726 nucleoside diphosphate pyrophosphatase (RefSeq) 0.67 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.53 SO3903 MutT/nudix family protein (NCBI ptt file) 0.67 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) low > 76
Pseudomonas stutzeri RCH2 0.48 Psest_0479 nudix-type nucleoside diphosphatase, YffH/AdpP family 0.62 Psest_0183 glycine dehydrogenase (decarboxylating) low > 67
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_08795 ADP-ribose pyrophosphatase 0.56 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3641 ADP-ribose pyrophosphatase (EC 3.6.1.13) 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 103
Pseudomonas sp. S08-1 0.46 OH686_15835 ADP-ribose pyrophosphatase 0.63 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas sp. RS175 0.46 PFR28_05094 ADP-ribose pyrophosphatase 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas fluorescens SBW25 0.46 PFLU_RS02445 NUDIX domain-containing protein 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS02445 NUDIX domain-containing protein 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.17 69
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_13025 ADP-ribose pyrophosphatase 0.62 AO353_08720 glycine dehydrogenase low > 101
Pseudomonas simiae WCS417 0.45 PS417_02370 ADP-ribose pyrophosphatase 0.56 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 88
Pseudomonas putida KT2440 0.44 PP_4919 ADP-ribose/sugar pyrophosphatase 0.61 PP_5192 glycine dehydrogenase low > 96
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_182 ADP-ribose pyrophosphatase (EC 3.6.1.13) 0.62 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1444 ADP-ribose pyrophosphatase (EC 3.6.1.13) 0.62 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0547 Conserved hypothetical protein 52 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0547 Conserved hypothetical protein 52 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0975 nudix-type nucleoside diphosphatase, YffH/AdpP family 0.58 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) — —
Rhodopseudomonas palustris CGA009 0.24 TX73_019105 NUDIX hydrolase 0.55 TX73_019935 aminomethyl-transferring glycine dehydrogenase low > 86

Not shown: 6 genomes with orthologs for b3034 only; 39 genomes with orthologs for b2903 only