| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 1.0 | Rru_A1438 | | Sigma-24 (FecI) (NCBI) | 0.53 | 19 |
| Azospirillum brasilense Sp245 | 0.68 | AZOBR_RS10600 | | peptidase C69 | 0.38 | AZOBR_RS27315 | | RNA polymerase sigma 70 | low | > 97 |
| Azospirillum sp. SherDot2 | 0.67 | MPMX19_00882 | | Metalloprotease TldD | 0.37 | MPMX19_03088 | | putative RNA polymerase sigma factor FecI | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.63 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.26 | Ga0059261_3549 | | RNA polymerase sigma factor, sigma-70 family | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.62 | TX73_004255 | | metalloprotease TldD | 0.22 | TX73_006850 | | RNA polymerase sigma factor | low | > 86 |
| Agrobacterium fabrum C58 | 0.61 | Atu0765 | | TldD | 0.24 | Atu3692 | | sigma factor | low | > 89 |
| Caulobacter crescentus NA1000 Δfur | 0.59 | CCNA_03522 | | Zn-dependent protease TldD | 0.24 | CCNA_01187 | | RNA polymerase ECF-type sigma factor | low | > 67 |
| Caulobacter crescentus NA1000 | 0.59 | CCNA_03522 | | Zn-dependent protease TldD | 0.24 | CCNA_01187 | | RNA polymerase ECF-type sigma factor | low | > 66 |
| Dyella japonica UNC79MFTsu3.2 | 0.54 | ABZR86_RS21715 | | metalloprotease TldD | 0.27 | ABZR86_RS00640 | | sigma-70 family RNA polymerase sigma factor | 0.53 | 7 |
| Dechlorosoma suillum PS | 0.53 | Dsui_3401 | | putative Zn-dependent protease-like protein | 0.26 | Dsui_1673 | | RNA polymerase sigma factor, sigma-70 family | — | — |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS06335 | | metalloprotease TldD | 0.20 | ABID97_RS21425 | | sigma-70 family RNA polymerase sigma factor | low | > 91 |
| Variovorax sp. SCN45 | 0.53 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.28 | GFF791 | | RNA polymerase sigma factor RpoE | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.53 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.24 | GFF1181 | | FIG006045: Sigma factor, ECF subfamily | low | > 90 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS03395 | | metalloprotease TldD | 0.26 | LRK54_RS09420 | | RNA polymerase sigma factor | low | > 59 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.22 | Psest_4339 | | DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog | low | > 67 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS05875 | | protease TldD | 0.24 | RR42_RS14885 | | DNA-directed RNA polymerase sigma-70 factor | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS13315 | | metalloprotease TldD | 0.26 | RS_RS14615 | | RNA polymerase sigma factor | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.29 | Pf6N2E2_21 | | Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS05455 | | metalloprotease TldD | 0.26 | RALBFv3_RS06665 | | RNA polymerase sigma factor | low | > 76 |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS08170 | | metalloprotease TldD | 0.26 | UW163_RS06960 | | RNA polymerase sigma factor | — | — |
| Pseudomonas simiae WCS417 | 0.52 | PS417_04285 | | protease TldD | 0.29 | PS417_17630 | | RNA polymerase sigma factor | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS04340 | | metalloprotease TldD | 0.28 | PFLU_RS19420 | | sigma-70 family RNA polymerase sigma factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS04340 | | metalloprotease TldD | 0.28 | PFLU_RS19420 | | sigma-70 family RNA polymerase sigma factor | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.44 | PfGW456L13_2727 | | FIG006045: Sigma factor, ECF subfamily | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_07095 | | protease TldD | 0.28 | AO356_22495 | | RNA polymerase subunit sigma-24 | low | > 104 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS11850 | | metalloprotease TldD | 0.26 | RPSI07_RS10560 | | RNA polymerase sigma factor | low | > 81 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.29 | Pf1N1B4_133 | | Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis | low | > 87 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00161 | | Metalloprotease TldD | 0.29 | PFR28_02867 | | putative RNA polymerase sigma factor FecI | low | > 88 |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS20140 | | metalloprotease TldD | 0.26 | HER17_RS14055 | | sigma-70 family RNA polymerase sigma factor | low | > 75 |
| Dickeya dadantii 3937 | 0.50 | DDA3937_RS01460 | | metalloprotease TldD | 0.19 | DDA3937_RS03525 | | sigma-70 family RNA polymerase sigma factor | low | > 74 |
| Rahnella sp. WP5 | 0.49 | EX31_RS12265 | | metalloprotease TldD | 0.18 | EX31_RS16485 | | sigma-70 family RNA polymerase sigma factor | low | > 89 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.20 | BT4070 | | RNA polymerase ECF-type sigma factor (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS03165 | | TldD/PmbA family protein | 0.19 | HMPREF1181_RS02545 | | sigma-70 family RNA polymerase sigma factor | low | > 56 |
Not shown: 55 genomes with orthologs for Rru_A0567 only; 4 genomes with orthologs for Rru_A1438 only