| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A2251 | | extracellular solute-binding protein, family 3 (NCBI) | 1.0 | Rru_A1316 | | AMP-dependent synthetase and ligase (NCBI) | 0.57 | 15 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_09900 | | ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) | 0.32 | AO356_06910 | | long-chain fatty acid--CoA ligase | low | > 104 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_04914 | | ABC transporter arginine-binding protein 1 | 0.32 | PFR28_03620 | | Long-chain-fatty-acid--CoA ligase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_3856 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.32 | Pf6N2E2_3244 | | Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) | low | > 103 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_0138 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.42 | Psest_2444 | | Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II | low | > 67 |
| Pseudomonas sp. S08-1 | 0.52 | OH686_14500 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | 0.32 | OH686_06325 | | Medium-chain-fatty-acid--CoA ligase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_11995 | | amino acid ABC transporter | 0.31 | AO353_15010 | | long-chain fatty acid--CoA ligase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_4912 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.31 | Psyr_0990 | | AMP-dependent synthetase and ligase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_4912 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.31 | Psyr_0990 | | AMP-dependent synthetase and ligase | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_377 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.32 | PfGW456L13_1619 | | Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_1641 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.30 | Pf1N1B4_5982 | | Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) | low | > 87 |
| Pseudomonas putida KT2440 | 0.49 | PP_0282 | | L-arginine ABC transporter - periplasmic binding subunit | 0.32 | PP_0763 | | Medium-chain-fatty-acid CoA ligase | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS01535 | | ABC transporter substrate-binding protein | 0.32 | PFLU_RS04585 | | fatty acid--CoA ligase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS01535 | | ABC transporter substrate-binding protein | 0.32 | PFLU_RS04585 | | fatty acid--CoA ligase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_01495 | | amino acid ABC transporter | 0.32 | PS417_04540 | | long-chain fatty acid--CoA ligase | low | > 88 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_02976 | | Octopine-binding periplasmic protein | 0.56 | MPMX19_05975 | | 3-methylmercaptopropionyl-CoA ligase | low | > 112 |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS09510 | | arginine ABC transporter substrate-binding protein | 0.12 | DDA3937_RS14710 | | (2,3-dihydroxybenzoyl)adenylate synthase | low | > 74 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3031 | | L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data) | 0.30 | HP15_2595 | | acyl-CoA synthetase | low | > 73 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS11350 | | ABC transporter substrate-binding protein | 0.52 | QEN71_RS21895 | | 3-(methylthio)propionyl-CoA ligase | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4691 | | Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein | 0.50 | GFF4586 | | 3-methylmercaptopropionyl-CoA ligase (DmdB) | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_005158 | | lysine/arginine/ornithine transport system substrate-binding protein | 0.52 | ABIE53_002150 | | acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_01522 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.54 | H281DRAFT_02538 | | fatty-acyl-CoA synthase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS29525 | | ABC transporter substrate-binding protein | 0.51 | BPHYT_RS09555 | | long-chain fatty acid--CoA ligase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_262p02360 | | putative histidine-binding periplasmic protein | 0.45 | PGA1_c35550 | | medium-chain-fatty-acid--CoA ligase AlkK | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS10775 | | cysteine ABC transporter substrate-binding protein | 0.29 | HSERO_RS07975 | | AMP-binding protein | low | > 78 |
| Variovorax sp. SCN45 | 0.20 | GFF6405 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | 0.48 | GFF1335 | | 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS31745 | | ABC transporter permease | 0.55 | RR42_RS11155 | | long-chain fatty acid--CoA ligase | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.19 | Ac3H11_2555 | | ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data) | 0.47 | Ac3H11_2529 | | 3-methylmercaptopropionyl-CoA ligase (DmdB) | low | > 79 |
| Ralstonia solanacearum PSI07 | 0.19 | RPSI07_RS14115 | | glutamine ABC transporter substrate-binding protein GlnH | 0.54 | RPSI07_RS16300 | | long-chain-fatty-acid--CoA ligase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.17 | RALBFv3_RS21335 | | amino acid ABC transporter substrate-binding protein | 0.55 | RALBFv3_RS01175 | | long-chain-fatty-acid--CoA ligase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.17 | UW163_RS22480 | | amino acid ABC transporter substrate-binding protein | 0.55 | UW163_RS14485 | | long-chain-fatty-acid--CoA ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.16 | RS_RS19470 | | amino acid ABC transporter substrate-binding protein | 0.55 | RS_RS08835 | | long-chain-fatty-acid--CoA ligase | low | > 80 |
Not shown: 43 genomes with orthologs for Rru_A2251 only; 8 genomes with orthologs for Rru_A1316 only