| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2418 | lrrA | transcriptional regulator | insig. | 100 | 100 |
| o | Pseudomonas sp. SVBP6 | COO64_RS20175 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS03790 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_453 | | LysR family transcriptional regulator STM2281 | insig. | 34 | 97 |
| o | Pseudomonas sp. RS175 | PFR28_02477 | | HTH-type transcriptional regulator GltC | insig. | 34 | 97 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02936 | | HTH-type transcriptional regulator GltC | insig. | 34 | 98 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_22835 | | LysR family transcriptional regulator | no data | 33 | 97 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_26935 | | LysR family transcriptional regulator | insig. | 32 | 96 |
| o | Pseudomonas simiae WCS417 | PS417_14015 | | LysR family transcriptional regulator | sig. | 33 | 96 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5005 | | LysR family transcriptional regulator STM2281 | insig. | 32 | 96 |
| | Pseudomonas sp. SVBP6 | COO64_RS08230 | | LysR family transcriptional regulator | insig. | 30 | 93 |
| | Pseudomonas sp. SVBP6 | COO64_RS07690 | | LysR family transcriptional regulator | insig. | 34 | 96 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS14600 | | LysR family transcriptional regulator | insig. | 31 | 96 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14600 | | LysR family transcriptional regulator | sig. | 31 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_560 | | Transcriptional regulators, LysR family | insig. | 33 | 82 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_1707 | | Transcriptional regulator | insig. | 32 | 90 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2933 | | LysR family transcriptional regulator STM2281 | insig. | 33 | 95 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_23720 | | LysR family transcriptional regulator | no data | 32 | 90 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02200 | | HTH-type transcriptional regulator CynR | cofit | 31 | 99 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04541 | | HTH-type transcriptional regulator GltC | no data | 32 | 82 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_03275 | | LysR family transcriptional regulator | insig. | 31 | 98 |
| | Xanthobacter sp. DMC5 | GFF698 | | HTH-type transcriptional regulator CynR | no data | 33 | 82 |
| | Pseudomonas simiae WCS417 | PS417_19125 | | LysR family transcriptional regulator | sig. | 32 | 82 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3449 | | Hydrogen peroxide-inducible genes activator | insig. | 30 | 87 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21120 | | LysR family transcriptional regulator | insig. | 32 | 82 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21120 | | LysR family transcriptional regulator | strong | 32 | 82 |
| o | Pseudomonas sp. DMC3 | GFF998 | | HTH-type transcriptional regulator CynR | cofit | 32 | 89 |
| | Agrobacterium fabrum C58 | Atu0873 | | transcriptional regulator, LysR family | insig. | 31 | 90 |
| | Enterobacter sp. TBS_079 | MPMX20_01913 | | HTH-type transcriptional regulator GltC | insig. | 32 | 89 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_07825 | | LysR family transcriptional regulator | insig. | 30 | 87 |
| | Pseudomonas orientalis W4I3 | QF045_RS12505 | | LysR substrate-binding domain-containing protein | insig. | 30 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27930 | | LysR family transcriptional regulator | strong | 32 | 82 |
| | Pseudomonas simiae WCS417 | PS417_10530 | | LysR family transcriptional regulator | sig. | 30 | 99 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04052 | | HTH-type transcriptional regulator CynR | cofit | 31 | 82 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS10590 | | LysR family transcriptional regulator | insig. | 30 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS10590 | | LysR family transcriptional regulator | sig. | 30 | 89 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03905 | | hypothetical protein | insig. | 33 | 81 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1842 | | LysR family transcriptional regulator STM2281 | insig. | 32 | 82 |
| | Pseudomonas orientalis W4I3 | QF045_RS21080 | | LysR family transcriptional regulator | cofit | 31 | 82 |
| o | Sphingobium sp. HT1-2 | GFF3394 | | Transcriptional regulator CidR, LysR family | insig. | 27 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_006109 | | DNA-binding transcriptional LysR family regulator | insig. | 31 | 89 |
| | Pseudomonas sp. RS175 | PFR28_01830 | | HTH-type transcriptional regulator CynR | insig. | 30 | 97 |
| | Variovorax sp. SCN45 | GFF6064 | | Transcriptional regulator YfeR, LysR family | no data | 30 | 84 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3236 | | transcriptional regulator, LysR family | strong | 31 | 99 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3236 | | transcriptional regulator, LysR family | insig. | 31 | 99 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0909 | | transcriptional regulator, LysR family | insig. | 33 | 82 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0909 | | transcriptional regulator, LysR family | insig. | 33 | 82 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS21375 | | LysR family transcriptional regulator | cofit | 29 | 97 |
| o | Pseudomonas sp. BP01 | JOY50_RS03035 | | LysR family transcriptional regulator | insig. | 32 | 82 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3156 | | transcriptional regulator, LysR family | insig. | 27 | 90 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3156 | | transcriptional regulator, LysR family | sig. | 27 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5832 | | LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase | no data | 30 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS24120 | | LysR family transcriptional regulator | insig. | 31 | 88 |
| | Paraburkholderia graminis OAS925 | ABIE53_002462 | | DNA-binding transcriptional LysR family regulator | insig. | 29 | 97 |
| | Pseudomonas sp. RS175 | PFR28_00022 | | HTH-type transcriptional regulator CysL | insig. | 29 | 87 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS33730 | | LysR family transcriptional regulator | no data | 31 | 84 |
| o | Klebsiella michiganensis M5al | BWI76_RS13065 | | LysR family transcriptional regulator | insig. | 29 | 85 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1211 | | Hydrogen peroxide-inducible genes activator | sig. | 31 | 83 |
| | Variovorax sp. SCN45 | GFF4271 | | Transcriptional regulator, LysR family | no data | 30 | 98 |
| | Pseudomonas sp. SVBP6 | COO64_RS08325 | | LysR family transcriptional regulator | insig. | 29 | 84 |
| o | Escherichia coli ECRC100 | OKFHMN_23085 | lysR | transcriptional regulator | cofit | 28 | 88 |
| o | Escherichia coli ECRC101 | MCAODC_14135 | lysR | transcriptional regulator | insig. | 28 | 88 |
| o | Escherichia coli ECRC102 | NIAGMN_20850 | lysR | transcriptional regulator | insig. | 28 | 88 |
| o | Escherichia coli ECRC98 | JDDGAC_27050 | lysR | transcriptional regulator | insig. | 28 | 88 |
| o | Escherichia coli ECRC99 | KEDOAH_05100 | lysR | transcriptional regulator | no data | 28 | 88 |
| | Erwinia amylovora T8 | OLJFJH_10895 | | LysR family transcriptional regulator | insig. | 30 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_15120 | | hypothetical protein | insig. | 31 | 88 |
| o | Escherichia coli ECOR38 | HEPCGN_22320 | lysR | transcriptional regulator | insig. | 28 | 88 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_2951 | | Chromosome initiation inhibitor | insig. | 31 | 90 |
| o | Dechlorosoma suillum PS | Dsui_3101 | | transcriptional regulator | sig. | 33 | 81 |
| | Paraburkholderia graminis OAS925 | ABIE53_005767 | | DNA-binding transcriptional LysR family regulator | insig. | 29 | 84 |
| | Pseudomonas segetis P6 | ACVTMO_RS13895 | | LysR family transcriptional regulator | insig. | 31 | 82 |
| | Variovorax sp. SCN45 | GFF6151 | | Transcriptional regulator, LysR family | strong | 31 | 66 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23640 | | LysR family transcriptional regulator | insig. | 31 | 82 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23640 | | LysR family transcriptional regulator | sig. | 31 | 82 |
| o | Desulfovibrio vulgaris Hildenborough JW710 | DVU2111 | | transcriptional regulator, LysR family (TIGR) | insig. | 31 | 82 |
| | Variovorax sp. OAS795 | ABID97_RS09325 | | LysR family transcriptional regulator | no data | 31 | 66 |
| | Pseudomonas sp. RS175 | PFR28_01326 | | HTH-type transcriptional regulator GltC | sig. | 31 | 82 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2110 | | LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase | insig. | 31 | 82 |
| | Bosea sp. OAE506 | ABIE41_RS22670 | | LysR substrate-binding domain-containing protein | insig. | 31 | 81 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21655 | | LysR family transcriptional regulator | insig. | 30 | 89 |
| | Variovorax sp. SCN45 | GFF3832 | | Transcriptional regulator KPN_02830, LysR family | no data | 30 | 82 |
| o | Escherichia coli ECOR27 | NOLOHH_18985 | | LysR family transcriptional regulator | insig. | 30 | 82 |
| o | Escherichia coli ECRC62 | BNILDI_17470 | | LysR family transcriptional regulator | insig. | 30 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_03927 | | HTH-type transcriptional activator CmpR | insig. | 30 | 89 |
| | Acinetobacter baumannii LAC-4 | RR41_RS12920 | | LysR family transcriptional regulator | no data | 29 | 88 |
| | Pseudomonas sp. BP01 | JOY50_RS21470 | | LysR family transcriptional regulator | insig. | 33 | 82 |
| | Pseudomonas sp. S08-1 | OH686_10780 | | Transcriptional regulator, LysR family | insig. | 31 | 82 |
| | Pseudomonas orientalis W4I3 | QF045_RS21370 | | LysR family transcriptional regulator | cofit | 32 | 82 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS08890 | | LysR family transcriptional regulator | insig. | 27 | 87 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS13660 | | LysR family transcriptional regulator | insig. | 34 | 81 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04078 | | HTH-type transcriptional regulator CynR | cofit | 31 | 82 |
| | Pseudomonas sp. SVBP6 | COO64_RS03600 | | LysR family transcriptional regulator | insig. | 30 | 82 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4759 | | Transcriptional regulators, LysR family | insig. | 29 | 83 |
| | Variovorax sp. SCN45 | GFF1900 | | Transcriptional regulator, LysR family | strong | 29 | 84 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3446 | | Cys regulon transcriptional activator CysB | insig. | 28 | 81 |
| | Variovorax sp. OAS795 | ABID97_RS20675 | | LysR family transcriptional regulator | insig. | 31 | 83 |
| o | Pseudomonas putida KT2440 | PP_3121 | | transcriptional regulator, LysR family | strong | 31 | 99 |
| | Shewanella amazonensis SB2B | Sama_0586 | | LysR family transcriptional regulator (RefSeq) | strong | 30 | 80 |
| | Pseudomonas sp. S08-1 | OH686_06115 | | Transcriptional regulator, LysR family | insig. | 32 | 80 |