Homologs of Pf6N2E2_641 from Pseudomonas fluorescens FW300-N2E2

Extracytoplasmic function (ECF) sigma factor VreI
SEED: Extracytoplasmic function (ECF) sigma factor VreI
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_641 Extracytoplasmic function (ECF) sigma factor VreI insig. 100 100
o Pseudomonas fluorescens FW300-N2C3 AO356_24740 RNA polymerase subunit sigma-24 insig. 97 95
o Pseudomonas sp. RS175 PFR28_01609 hypothetical protein sig. 94 95
o Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 86 95
o Pseudomonas fluorescens SBW25 PFLU_RS11840 RNA polymerase sigma factor insig. 85 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS11840 RNA polymerase sigma factor sig. 85 95
o Pseudomonas sp. DMC3 GFF3003 hypothetical protein insig. 83 95
o Pseudomonas aeruginosa MRSN321 DY961_RS09155 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 73 95
o Pseudomonas aeruginosa PA14 IKLFDK_02765 RNA polymerase sigma factor VreI insig. 73 95
o Pseudomonas aeruginosa PUPa3 DQ20_RS58865 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 73 95
o Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 58 94
o Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 52 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05075 RNA polymerase sigma factor insig. 56 93
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 52 95
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 42 92
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 38 87
  Rhodopseudomonas palustris CGA009 TX73_006880 sigma-70 family RNA polymerase sigma factor insig. 39 86
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 38 85
o Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 40 76
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 37 84
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 40 86
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 40 86
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2986 RNA polymerase sigma factor, sigma-70 family insig. 36 80
  Variovorax sp. SCN45 GFF1727 no description insig. 33 93
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 35 87
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 31 88
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 40 73
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 39 79
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 40 78
  Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 40 78
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 32 86
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 32 84
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 32 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 38 78
  Variovorax sp. SCN45 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 32 79
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 35 79
o Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 32 83
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 30 76
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 36 78
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 36 78
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 38 78
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 36 78
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 38 78
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 34 91
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 33 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 37 78
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 36 74
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 36 74
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 36 74
  Pseudomonas aeruginosa PUPa3 DQ20_RS53290 RNA polymerase sigma factor insig. 28 86
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 36 88
  Pseudomonas aeruginosa MRSN321 DY961_RS19165 RNA polymerase sigma factor insig. 28 86
  Sphingobium sp. HT1-2 GFF2714 FIG006045: Sigma factor, ECF subfamily insig. 37 69
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 34 78
  Pseudomonas aeruginosa PA14 IKLFDK_06490 RNA polymerase subunit sigma-70 insig. 28 86
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 33 81
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 37 73
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 35 81
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 33 79
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 32 81
  Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 34 72
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 34 72
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 37 78
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 32 88
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 34 79
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 33 86
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 33 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 81
  Pseudomonas orientalis W4I3 QF045_RS12270 sigma-70 family RNA polymerase sigma factor insig. 34 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 86
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 33 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 33 81
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 33 86
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 31 82
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 36 71
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 33 82
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 33 84
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 35 73
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 34 86
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein cofit 31 86
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 31 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 31 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 36 70
  Methylophilus sp. DMC18 GFF230 hypothetical protein insig. 30 81
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 33 72
  Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 34 72
  Pseudomonas orientalis W4I3 QF045_RS24870 sigma-70 family RNA polymerase sigma factor insig. 32 79
  Ralstonia solanacearum PSI07 RPSI07_RS01670 RNA polymerase sigma factor insig. 28 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1886 FIG006045: Sigma factor, ECF subfamily insig. 30 82
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 34 77
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 34 73
  Pseudomonas fluorescens SBW25 PFLU_RS24340 sigma-70 family RNA polymerase sigma factor insig. 33 75
  Pseudomonas fluorescens SBW25-INTG PFLU_RS24340 sigma-70 family RNA polymerase sigma factor strong 33 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 26 82
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 26 82
  Pseudomonas sp. SVBP6 COO64_RS04025 sigma-70 family RNA polymerase sigma factor insig. 34 77
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 32 87
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 33 77
  Ralstonia solanacearum GMI1000 RS_RS19160 RNA polymerase sigma factor sig. 28 82
  Pseudomonas aeruginosa MRSN321 DY961_RS18335 fpvI;inference=COORDINATES pyoverdine signaling pathway sigma factor FpvI insig. 37 73