Homologs of ypdC from Escherichia coli ECOR38

ypdC: Uncharacterized HTH-type transcriptional regulator YpdC
SEED: Putative HTH-type transcriptional regulator ypdC

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli BL21 ECD_02292 putative DNA-binding protein insig. 100 100
o Escherichia coli ECOR27 NOLOHH_14040 ypdC Uncharacterized HTH-type transcriptional regulator YpdC cofit 100 100
  Escherichia coli ECOR38 HEPCGN_21565 ypdC Uncharacterized HTH-type transcriptional regulator YpdC cofit 100 100
o Escherichia coli ECRC62 BNILDI_12895 ypdC Uncharacterized HTH-type transcriptional regulator YpdC insig. 100 100
o Escherichia coli Nissle 1917 ECOLIN_RS13705 AraC family transcriptional regulator insig. 99 100
o Escherichia coli ECRC101 OKFHMN_22355 ypdC Uncharacterized HTH-type transcriptional regulator YpdC insig. 99 100
o Escherichia coli ECRC101 MCAODC_12885 ypdC Uncharacterized HTH-type transcriptional regulator YpdC insig. 99 100
o Escherichia coli ECRC102 NIAGMN_20130 ypdC Uncharacterized HTH-type transcriptional regulator YpdC insig. 99 100
o Escherichia coli ECRC98 JDDGAC_26320 ypdC Uncharacterized HTH-type transcriptional regulator YpdC no data 99 100
o Escherichia coli ECRC99 KEDOAH_05865 ypdC Uncharacterized HTH-type transcriptional regulator YpdC no data 99 100
o Escherichia fergusonii Becca EFB2_01492 HTH-type transcriptional activator RhaR insig. 99 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01339 HTH-type transcriptional activator RhaR insig. 99 100
o Escherichia coli BW25113 b2382 ypdC predicted DNA-binding protein (NCBI) insig. 99 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_09150 AraC family transcriptional regulator cofit 37 94
  Klebsiella michiganensis M5al BWI76_RS00825 AraC family transcriptional regulator insig. 33 95
  Rahnella sp. WP5 EX31_RS14690 helix-turn-helix transcriptional regulator insig. 33 94
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2340 Transcriptional regulator, AraC family insig. 36 95
  Escherichia fergusonii Becca EFB2_04660 HTH-type transcriptional activator RhaS insig. 35 94
  Escherichia coli Nissle 1917 ECOLIN_RS22825 AraC family transcriptional regulator insig. 35 94
  Escherichia coli ECOR27 NOLOHH_05750 yijO Uncharacterized HTH-type transcriptional regulator YijO cofit 35 94
  Escherichia coli BW25113 b3954 yijO predicted DNA-binding transcriptional regulator (NCBI) insig. 35 94
  Escherichia coli ECOR38 HEPCGN_12250 yijO Uncharacterized HTH-type transcriptional regulator YijO cofit 35 94
  Escherichia coli ECRC62 BNILDI_05775 yijO Uncharacterized HTH-type transcriptional regulator YijO insig. 35 94
  Escherichia coli BL21 ECD_03839 AraC family putative transcriptional activator insig. 35 94
  Escherichia coli ECRC101 OKFHMN_13605 yijO Uncharacterized HTH-type transcriptional regulator YijO insig. 35 94
  Escherichia coli ECRC101 MCAODC_04105 yijO Uncharacterized HTH-type transcriptional regulator YijO insig. 35 94
  Escherichia coli ECRC102 NIAGMN_11355 yijO Uncharacterized HTH-type transcriptional regulator YijO insig. 35 94
  Escherichia coli ECRC98 JDDGAC_17230 yijO Uncharacterized HTH-type transcriptional regulator YijO no data 35 94
  Escherichia coli ECRC99 KEDOAH_14555 yijO Uncharacterized HTH-type transcriptional regulator YijO no data 35 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04096 HTH-type transcriptional activator RhaS insig. 35 94
  Rahnella sp. WP5 EX31_RS16720 helix-turn-helix domain-containing protein sig. 34 88
  Klebsiella michiganensis M5al BWI76_RS10640 AraC family transcriptional regulator insig. 34 94
  Enterobacter asburiae PDN3 EX28DRAFT_4417 Helix-turn-helix domain insig. 39 57
  Enterobacter sp. TBS_079 MPMX20_04525 HTH-type transcriptional activator RhaR insig. 36 67
  Klebsiella michiganensis M5al BWI76_RS11895 AraC family transcriptional regulator sig. 27 82
  Klebsiella michiganensis M5al BWI76_RS00695 AraC family transcriptional regulator sig. 24 83
  Rhodospirillum rubrum S1H Rru_A0919 Two Component Transcriptional Regulator, AraC family (NCBI) insig. 29 34
  Enterobacter asburiae PDN3 EX28DRAFT_0781 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain insig. 32 40
  Dickeya dadantii 3937 DDA3937_RS02330 HTH-type transcriptional activator RhaR insig. 34 40
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2267 L-rhamnose operon transcriptional activator RhaR insig. 24 82
  Variovorax sp. SCN45 GFF5573 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain insig. 32 39
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2266 L-rhamnose operon regulatory protein RhaS insig. 35 31
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS05430 hybrid sensor histidine kinase/response regulator transcription factor insig. 30 41
  Escherichia coli ECRC101 OKFHMN_13885 rhaR HTH-type transcriptional activator RhaR insig. 24 82
  Escherichia coli ECRC101 MCAODC_04385 rhaR HTH-type transcriptional activator RhaR insig. 24 82
  Escherichia coli ECRC102 NIAGMN_11640 rhaR HTH-type transcriptional activator RhaR insig. 24 82
  Escherichia coli ECRC98 JDDGAC_17510 rhaR HTH-type transcriptional activator RhaR no data 24 82
  Escherichia coli ECRC99 KEDOAH_14270 rhaR HTH-type transcriptional activator RhaR no data 24 82
  Enterobacter sp. TBS_079 MPMX20_02687 HTH-type transcriptional regulator CdhR insig. 32 40
  Escherichia coli ECOR27 NOLOHH_06015 rhaR HTH-type transcriptional activator RhaR cofit 24 82
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04144 HTH-type transcriptional activator RhaR insig. 24 82
  Escherichia coli BW25113 b3906 rhaR DNA-binding transcriptional activator, L-rhamnose-binding (RefSeq) insig. 24 82
  Escherichia coli Nissle 1917 ECOLIN_RS22505 HTH-type transcriptional activator RhaR insig. 24 82
  Escherichia coli BL21 ECD_03792 transcriptional activator of rhaSR insig. 24 82
  Escherichia fergusonii Becca EFB2_04711 HTH-type transcriptional activator RhaR insig. 24 82
  Dickeya dianthicola 67-19 HGI48_RS02285 HTH-type transcriptional activator RhaR insig. 34 35
  Dickeya dianthicola ME23 DZA65_RS02400 HTH-type transcriptional activator RhaR insig. 34 35
  Escherichia coli ECRC62 BNILDI_05510 rhaR HTH-type transcriptional activator RhaR insig. 24 82
  Sinorhizobium meliloti 1021 SMc02609 transcriptional regulator insig. 33 34
  Agrobacterium fabrum C58 Atu4225 AraC family transcriptional regulator insig. 33 35
  Rahnella sp. WP5 EX31_RS04165 HTH-type transcriptional activator RhaR insig. 35 32
  Klebsiella michiganensis M5al BWI76_RS00690 transcriptional activator RhaS strong 30 41
  Escherichia coli ECOR38 HEPCGN_12525 rhaR HTH-type transcriptional activator RhaR cofit 24 82
  Pseudomonas sp. S08-1 OH686_03245 Transcriptional regulator, AraC family insig. 28 52
  Enterobacter sp. TBS_079 MPMX20_04561 HTH-type transcriptional activator RhaR strong 23 83
  Escherichia coli BL21 ECD_03791 transcriptional activator of rhaBAD and rhaT insig. 32 31
  Escherichia coli ECOR27 NOLOHH_06020 rhaS HTH-type transcriptional activator RhaS cofit 32 31
  Escherichia coli ECRC62 BNILDI_05505 rhaS HTH-type transcriptional activator RhaS insig. 32 31
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04145 HTH-type transcriptional activator RhaS insig. 32 31
  Escherichia coli BW25113 b3905 rhaS DNA-binding transcriptional activator, L-rhamnose-binding (NCBI) insig. 32 31
  Rahnella sp. WP5 EX31_RS06945 helix-turn-helix domain-containing protein insig. 29 39
  Pseudomonas sp. S08-1 OH686_23095 Transcriptional regulator, AraC family insig. 28 38
  Pantoea sp. MT58 IAI47_10375 arabinose operon transcriptional regulator AraC insig. 26 56
  Pantoea sp. MT58 IAI47_09690 HTH-type transcriptional activator RhaR insig. 35 33
  Escherichia fergusonii Becca EFB2_04712 HTH-type transcriptional activator RhaS insig. 32 31
  Escherichia coli Nissle 1917 ECOLIN_RS22500 HTH-type transcriptional activator RhaS insig. 32 31
  Escherichia coli ECOR38 HEPCGN_12530 rhaS HTH-type transcriptional activator RhaS insig. 31 32
  Paraburkholderia graminis OAS925 ABIE53_005806 transcriptional regulator GlxA family with amidase domain sig. 26 33
  Klebsiella michiganensis M5al BWI76_RS02750 DNA-binding transcriptional regulator AraC insig. 25 50
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06070 helix-turn-helix domain-containing protein insig. 32 32
  Enterobacter sp. TBS_079 MPMX20_04562 HTH-type transcriptional activator RhaS strong 32 31
  Marinobacter adhaerens HP15 HP15_2577 protein containing helix-turn-helix, AraC domain insig. 31 35
  Erwinia tracheiphila SCR3 LU632_RS11695 rhaR HTH-type transcriptional activator RhaR insig. 42 25
  Variovorax sp. SCN45 GFF925 hypothetical protein insig. 33 36
  Bacteroides stercoris CC31F HMPREF1181_RS02940 response regulator insig. 27 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05939 Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain no data 27 33
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1125 Transcriptional regulator, AraC family insig. 26 62
  Bacteroides thetaiotaomicron VPI-5482 BT2372 transcriptional regulator (NCBI ptt file) sig. 34 37
  Rhizobium sp. OAE497 ABIE40_RS22540 AraC family transcriptional regulator strong 33 34
  Pectobacterium carotovorum WPP14 HER17_RS03335 AraC family transcriptional regulator insig. 27 60
  Cupriavidus basilensis FW507-4G11 RR42_RS28635 AraC family transcriptional regulator insig. 25 52
  Erwinia tracheiphila SCR3 LU632_RS11690 rhaS HTH-type transcriptional activator RhaS insig. 23 96
  Burkholderia phytofirmans PsJN BPHYT_RS31005 hypothetical protein no data 27 34
  Agrobacterium fabrum C58 Atu3462 AraC family transcriptional regulator insig. 31 37
  Enterobacter sp. TBS_079 MPMX20_03870 HTH-type transcriptional activator RhaS insig. 25 56
  Burkholderia phytofirmans PsJN BPHYT_RS00535 AraC family transcriptional regulator insig. 27 52
  Pseudomonas stutzeri RCH2 Psest_1369 AraC-type DNA-binding domain-containing proteins insig. 24 76
  Escherichia coli ECRC101 OKFHMN_13890 rhaS HTH-type transcriptional activator RhaS insig. 31 31
  Escherichia coli ECRC101 MCAODC_04390 rhaS HTH-type transcriptional activator RhaS insig. 31 31
  Escherichia coli ECRC102 NIAGMN_11645 rhaS HTH-type transcriptional activator RhaS insig. 31 31