| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3147 | | AraC-type DNA-binding domain-containing proteins | sig. | 100 | 100 |
| o | Cellulophaga baltica 18 | M666_RS14205 | | helix-turn-helix transcriptional regulator | insig. | 44 | 97 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS09425 | | helix-turn-helix transcriptional regulator | insig. | 41 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_09165 | | AraC family transcriptional regulator | insig. | 41 | 96 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_21300 | | hypothetical protein | insig. | 40 | 96 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21415 | | AraC family transcriptional regulator | strong | 38 | 95 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_21475 | | hypothetical protein | strong | 35 | 95 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1749 | | AraC-type DNA-binding domain-containing proteins | insig. | 36 | 97 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4126 | | AraC-type DNA-binding domain-containing proteins | insig. | 37 | 89 |
| | Cellulophaga baltica 18 | M666_RS06490 | | AraC family transcriptional regulator | cofit | 32 | 84 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3220 | | hypothetical protein | insig. | 30 | 73 |
| | Pseudomonas sp. DMC3 | GFF1052 | | HTH-type transcriptional activator RhaR | cofit | 32 | 38 |
| | Sinorhizobium meliloti 1021 | SM_b21419 | | AraC family transcriptional regulator | insig. | 26 | 55 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS03525 | | helix-turn-helix transcriptional regulator | sig. | 28 | 67 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_00493 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | insig. | 26 | 78 |
| | Pseudomonas stutzeri RCH2 | Psest_2061 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 32 | 36 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03437 | | response regulator receiver domain protein | strong | 28 | 58 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_932 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 34 | 46 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1125 | | Transcriptional regulator, AraC family | insig. | 31 | 35 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS00165 | | response regulator | strong | 26 | 58 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26250 | | AraC family transcriptional regulator | insig. | 31 | 35 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_338 | | Transcriptional regulator, AraC family | insig. | 30 | 42 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS08450 | | response regulator | strong | 29 | 49 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03582 | | response regulator receiver domain protein | cofit | 24 | 62 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS02675 | | response regulator | insig. | 31 | 40 |
| | Pseudomonas sp. S08-1 | OH686_06615 | | hypothetical protein | insig. | 30 | 42 |
| | Marinobacter adhaerens HP15 | HP15_905 | | protein containing helix-turn-helix, AraC domain | insig. | 28 | 61 |
| | Pseudomonas sp. RS175 | PFR28_02656 | | HTH-type transcriptional regulator CdhR | strong | 26 | 41 |
| | Pseudomonas sp. RS175 | PFR28_01504 | | HTH-type transcriptional activator RhaR | insig. | 29 | 36 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_940 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 33 | 42 |
| | Agrobacterium fabrum C58 | Atu4297 | | AraC family transcriptional regulator | strong | 30 | 38 |
| | Pseudomonas sp. RS175 | PFR28_02570 | | HTH-type transcriptional regulator CdhR | insig. | 29 | 42 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_247 | | Transcriptional regulator, AraC family | insig. | 24 | 45 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21920 | | AraC family transcriptional regulator | insig. | 24 | 45 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01105 | | transcriptional regulator, AraC family | insig. | 29 | 36 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_09150 | | AraC family transcriptional regulator | cofit | 26 | 59 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2667 | | Right origin-binding protein | strong | 27 | 38 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS11030 | | GlxA family transcriptional regulator | insig. | 25 | 80 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS08915 | | AraC family transcriptional regulator | strong | 28 | 89 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_00685 | | AraC family transcriptional regulator | insig. | 24 | 78 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_224 | | transcription factor nitR | insig. | 24 | 78 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS20015 | | helix-turn-helix transcriptional regulator | insig. | 30 | 42 |
| | Acinetobacter baumannii LAC-4 | RR41_RS12805 | | AraC family transcriptional regulator | insig. | 34 | 32 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4154 | | Transcriptional regulator, AraC family | insig. | 28 | 36 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS01675 | | AraC family transcriptional regulator | strong | 31 | 43 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS15390 | | AraC family transcriptional regulator | insig. | 32 | 40 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS03035 | | AraC family transcriptional regulator | cofit | 28 | 89 |
| | Enterobacter sp. TBS_079 | MPMX20_02481 | | Right origin-binding protein | sig. | 23 | 38 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS05310 | | AraC family transcriptional regulator | insig. | 27 | 41 |
| | Rahnella sp. WP5 | EX31_RS20375 | | helix-turn-helix transcriptional regulator | insig. | 26 | 46 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1904 | | transcriptional regulator, AraC-type (NCBI ptt file) | insig. | 27 | 36 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01480 | | transcriptional regulator, effector binding domain protein | insig. | 27 | 36 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS03490 | | response regulator transcription factor | insig. | 25 | 46 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04394 | | response regulator receiver domain protein | strong | 24 | 58 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04132 | | transcriptional regulator, AraC family | strong | 26 | 59 |
| | Xanthobacter sp. DMC5 | GFF3380 | | HTH-type transcriptional activator RhaR | insig. | 21 | 84 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03606 | | transcriptional regulator, AraC family | strong | 28 | 42 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3768 | | transcriptional regulator (NCBI ptt file) | strong | 28 | 42 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2213 | | transcriptional regulator, AraC family | insig. | 26 | 66 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2213 | | transcriptional regulator, AraC family | insig. | 26 | 66 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS01750 | | AraC family transcriptional regulator | insig. | 29 | 52 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21060 | | GlxA family transcriptional regulator | insig. | 27 | 45 |
| | Rhizobium sp. OAE497 | ABIE40_RS29585 | | GlxA family transcriptional regulator | insig. | 25 | 56 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2910 | | transcriptional regulator (NCBI ptt file) | insig. | 24 | 89 |
| | Pseudomonas segetis P6 | ACVTMO_RS02370 | | GlxA family transcriptional regulator | insig. | 23 | 40 |
| | Pectobacterium carotovorum WPP14 | HER17_RS13315 | | AraC family transcriptional regulator | insig. | 26 | 47 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04003 | | HTH-type transcriptional regulator CdhR | insig. | 22 | 41 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2755 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 21 | 39 |
| | Agrobacterium fabrum C58 | Atu0248 | | transcriptional regulator, AraC family | insig. | 25 | 44 |
| | Klebsiella michiganensis M5al | BWI76_RS13355 | | AraC family transcriptional regulator | insig. | 24 | 49 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4124 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 24 | 65 |