Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08315 | | PAS sensor protein | sig. | 100 | 100 |
| Rhodopseudomonas palustris CGA009 | TX73_015620 | | ATP-binding protein | insig. | 36 | 95 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS10565 | | ATP-binding protein | cofit | 35 | 96 |
| Pseudomonas stutzeri RCH2 | Psest_4345 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 34 | 96 |
| Agrobacterium fabrum C58 | Atu1990 | | bacteriophytochrome protein | insig. | 35 | 97 |
| Burkholderia phytofirmans PsJN | BPHYT_RS06325 | | ATPase | strong | 35 | 98 |
| Azospirillum sp. SherDot2 | MPMX19_04272 | | Phytochrome-like protein cph1 | insig. | 34 | 96 |
| Azospirillum brasilense Sp245 | AZOBR_RS30860 | | sensor histidine kinase | strong | 35 | 97 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 33 | 96 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_09865 | | histidine kinase | sig. | 33 | 95 |
| Rhizobium sp. OAE497 | ABIE40_RS14515 | | HWE histidine kinase domain-containing protein | insig. | 33 | 96 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | sig. | 33 | 95 |
| Pseudomonas putida KT2440 | PP_2356 | | putative Phytochrome family protein | strong | 33 | 96 |
| Variovorax sp. SCN45 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 33 | 96 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 33 | 95 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 33 | 95 |
| Azospirillum brasilense Sp245 | AZOBR_RS30160 | | chemotaxis protein CheY | insig. | 30 | 97 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03395 | | ATP-binding protein | sig. | 30 | 95 |
| Phaeobacter inhibens DSM 17395 | PGA1_c28680 | | putative bacteriophytochrome | insig. | 32 | 96 |
| Azospirillum sp. SherDot2 | MPMX19_01598 | | hypothetical protein | insig. | 30 | 96 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15480 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 32 | 95 |
| Pseudomonas sp. RS175 | PFR28_04918 | | Phytochrome-like protein cph1 | insig. | 33 | 95 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05925 | | hypothetical protein | cofit | 30 | 97 |
| Rhodopseudomonas palustris CGA009 | TX73_015615 | | ATP-binding protein | insig. | 29 | 98 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08760 | | histidine kinase | strong | 33 | 96 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 31 | 94 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 31 | 94 |
| Ralstonia sp. UNC404CL21Col | ABZR87_RS02225 | | ATP-binding protein | strong | 32 | 93 |
| Pseudomonas simiae WCS417 | PS417_23325 | | histidine kinase | insig. | 31 | 95 |
| Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 30 | 96 |
| Pseudomonas fluorescens SBW25 | PFLU_RS25130 | | GAF domain-containing protein | insig. | 31 | 95 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS25130 | | GAF domain-containing protein | sig. | 31 | 95 |
| Rhizobium sp. OAE497 | ABIE40_RS26950 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 31 | 99 |
| Agrobacterium fabrum C58 | Atu2165 | | bacteriophytochrome protein | insig. | 30 | 97 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS12460 | | light-regulated signal transduction histidine kinase | insig. | 37 | 66 |
| Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 32 | 96 |
o | Lysobacter sp. OAE881 | ABIE51_RS17880 | | GAF domain-containing protein | insig. | 31 | 94 |
| Variovorax sp. SCN45 | GFF1412 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 30 | 94 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5288.1 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 29 | 95 |
| Rhodospirillum rubrum S1H | Rru_A2235 | | Multi-sensor Signal Transduction Histidine Kinase (NCBI) | strong | 30 | 99 |
| Rhodopseudomonas palustris CGA009 | TX73_000630 | | ATP-binding protein | insig. | 30 | 93 |
| Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 30 | 96 |
| Alteromonas macleodii MIT1002 | MIT1002_02965 | | Phytochrome-like protein cph1 | insig. | 28 | 96 |
| Rhodopseudomonas palustris CGA009 | TX73_007660 | | GAF domain-containing protein | cofit | 32 | 68 |
| Magnetospirillum magneticum AMB-1 | AMB_RS16825 | | hypothetical protein | insig. | 27 | 95 |
| Alteromonas macleodii MIT1002 | MIT1002_03619 | | Phytochrome-like protein cph1 | insig. | 26 | 92 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 26 | 36 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2534 | | diguanylate cyclase with GAF sensor | insig. | 26 | 29 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 23 | 39 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 23 | 34 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 22 | 34 |