Homologs of BACOVA_01520 from Bacteroides ovatus ATCC 8483

cold-shock DNA-binding domain protein
SEED: Cold shock protein CspA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides ovatus ATCC 8483 BACOVA_01520 cold-shock DNA-binding domain protein insig. 100 100
o Bacteroides stercoris CC31F HMPREF1181_RS03720 cold shock domain-containing protein insig. 77 82
o Bacteroides thetaiotaomicron VPI-5482 BT1884 cold shock protein, putative DNA-binding protein (NCBI ptt file) insig. 85 84
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS13590 cold shock domain-containing protein insig. 65 84
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16955 cold shock domain-containing protein sig. 55 81
o Phocaeicola dorei CL03T12C01 ABI39_RS12865 cold shock domain-containing protein insig. 54 81
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_03605 DNA-binding protein insig. 42 71
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24050 DNA-binding protein insig. 45 81
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15105 cold-shock protein insig. 42 71
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04475 cold-shock protein insig. 56 32
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3729 Cold shock proteins no data 51 33
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_03615 cold-shock protein insig. 53 32
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS23045 cold-shock protein insig. 47 33
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15100 cold-shock protein insig. 44 34
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4666 Cold shock proteins insig. 40 33
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11580 cold-shock protein no data 44 34
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS11070 cold-shock protein no data 42 33
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12665 cold-shock protein strong 44 33
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS06310 cold-shock protein insig. 44 33
  Shewanella loihica PV-4 Shew_1165 cold-shock DNA-binding domain-containing protein (RefSeq) no data 41 32
  Serratia liquefaciens MT49 IAI46_14845 transcription antiterminator/RNA stability regulator CspE no data 39 33
  Pantoea sp. MT58 IAI47_08745 transcription antiterminator/RNA stability regulator CspE insig. 39 33
  Pectobacterium carotovorum WPP14 HER17_RS11355 transcription antiterminator/RNA stability regulator CspE cofit 39 33
  Rahnella sp. WP5 EX31_RS24665 transcription antiterminator/RNA stability regulator CspE insig. 39 33
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20000 cold-shock protein insig. 46 32
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03861 cold-shock DNA-binding protein family no data 42 32
  Paraburkholderia graminis OAS925 ABIE53_004916 CspA family cold shock protein no data 42 32
  Dickeya dadantii 3937 DDA3937_RS11310 transcription antiterminator/RNA stability regulator CspE no data 40 33
  Dickeya dianthicola 67-19 HGI48_RS11345 transcription antiterminator/RNA stability regulator CspE no data 40 33
  Dickeya dianthicola ME23 DZA65_RS11690 transcription antiterminator/RNA stability regulator CspE insig. 40 33
  Escherichia coli BL21 ECD_01793 stress protein, member of the CspA-family strong 39 33
  Escherichia fergusonii Becca EFB2_02177 Cold shock-like protein CspC insig. 39 33
  Escherichia coli ECOR27 NOLOHH_17020 cspE transcription antiterminator/RNA stability regulator CspE no data 39 33
  Escherichia coli ECOR38 HEPCGN_04895 cspE transcription antiterminator/RNA stability regulator CspE no data 39 33
  Escherichia coli ECRC100 OKFHMN_26495 cspE transcription antiterminator/RNA stability regulator CspE insig. 39 33
  Escherichia coli ECRC101 MCAODC_18910 cspE transcription antiterminator/RNA stability regulator CspE sig. 39 33
  Escherichia coli ECRC102 NIAGMN_01565 cspE transcription antiterminator/RNA stability regulator CspE no data 39 33
  Escherichia coli ECRC62 BNILDI_15800 cspE transcription antiterminator/RNA stability regulator CspE cofit 39 33
  Escherichia coli ECRC98 JDDGAC_01070 cspE transcription antiterminator/RNA stability regulator CspE insig. 39 33
  Escherichia coli ECRC99 KEDOAH_01610 cspE transcription antiterminator/RNA stability regulator CspE no data 39 33
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01907 Cold shock-like protein CspC insig. 39 33
  Escherichia coli Nissle 1917 ECOLIN_RS10145 transcription antiterminator/RNA stability regulator CspE no data 39 33
  Enterobacter asburiae PDN3 EX28DRAFT_0735 Cold shock proteins no data 39 33
  Enterobacter sp. TBS_079 MPMX20_02729 Cold shock-like protein CspC strong 39 33
  Erwinia tracheiphila SCR3 LU632_RS13210 cspE transcription antiterminator/RNA stability regulator CspE strong 39 33
  Escherichia coli BW25113 b1823 cspC stress protein, member of the CspA-family (NCBI) strong 39 33
  Klebsiella michiganensis M5al BWI76_RS17930 cold-shock protein CspC sig. 39 33
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2838 Cold shock protein CspC insig. 39 33
  Pseudomonas fluorescens FW300-N2C3 AO356_14005 cold-shock protein insig. 33 34
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4727 Cold shock protein CspD insig. 35 34
  Kangiella aquimarina DSM 16071 B158DRAFT_1826 Cold shock proteins strong 42 33
  Burkholderia phytofirmans PsJN BPHYT_RS33480 cold-shock protein no data 41 32
  Rahnella sp. WP5 EX31_RS10935 transcription antiterminator/RNA stability regulator CspE cofit 36 34
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18670 cold-shock protein strong 47 32
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21565 cold-shock protein insig. 41 33
  Burkholderia phytofirmans PsJN BPHYT_RS34185 cold-shock protein sig. 41 33
  Serratia liquefaciens MT49 IAI46_16260 transcription antiterminator/RNA stability regulator CspE no data 37 34
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03525 cold-shock DNA-binding protein family sig. 38 34
  Paraburkholderia graminis OAS925 ABIE53_004735 CspA family cold shock protein strong 38 34
  Paraburkholderia sabiae LMG 24235 QEN71_RS39145 cold-shock protein no data 39 32
  Pseudomonas sp. RS175 PFR28_04128 Cold shock-like protein CspA insig. 33 34
  Paraburkholderia sabiae LMG 24235 QEN71_RS27700 cold-shock protein no data 39 32
  Paraburkholderia sabiae LMG 24235 QEN71_RS35875 cold-shock protein insig. 38 33
  Pseudomonas sp. S08-1 OH686_00225 cold shock domain protein CspD insig. 33 46
  Rhizobium sp. OAE497 ABIE40_RS10900 cold-shock protein insig. 42 33
  Paraburkholderia graminis OAS925 ABIE53_003225 CspA family cold shock protein sig. 41 32
  Dickeya dadantii 3937 DDA3937_RS06115 transcription antiterminator/RNA stability regulator CspE no data 38 33
  Dickeya dianthicola 67-19 HGI48_RS06165 transcription antiterminator/RNA stability regulator CspE no data 38 33
  Dickeya dianthicola ME23 DZA65_RS06510 transcription antiterminator/RNA stability regulator CspE insig. 38 33
  Serratia liquefaciens MT49 IAI46_05870 transcription antiterminator/RNA stability regulator CspE insig. 38 33
  Erwinia tracheiphila SCR3 LU632_RS16440 cspE transcription antiterminator/RNA stability regulator CspE no data 38 33
  Vibrio cholerae E7946 ATCC 55056 CSW01_14830 cold-shock protein CspA no data 34 33
  Burkholderia phytofirmans PsJN BPHYT_RS15270 cold-shock protein no data 41 32
  Pectobacterium carotovorum WPP14 HER17_RS15290 transcription antiterminator/RNA stability regulator CspE cofit 38 33
  Rahnella sp. WP5 EX31_RS23030 transcription antiterminator/RNA stability regulator CspE sig. 38 33
  Cupriavidus basilensis FW507-4G11 RR42_RS37535 cold-shock protein no data 37 32
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16470 cold-shock protein no data 43 33
  Cupriavidus basilensis FW507-4G11 RR42_RS14275 cold-shock protein no data 38 32
  Klebsiella michiganensis M5al BWI76_RS07980 cold-shock protein no data 38 33
  Pantoea sp. MT58 IAI47_14075 transcription antiterminator/RNA stability regulator CspE sig. 38 33
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4536 Cold shock protein CspE no data 38 33
  Pseudomonas simiae WCS417 PS417_16520 cold-shock protein insig. 33 33
  Azospirillum sp. SherDot2 MPMX19_01980 hypothetical protein no data 32 39
  Paraburkholderia sabiae LMG 24235 QEN71_RS03700 cold-shock protein insig. 39 32
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06265 cold-shock protein insig. 40 32
  Enterobacter asburiae PDN3 EX28DRAFT_2340 Cold shock proteins no data 38 33
  Enterobacter sp. TBS_079 MPMX20_01283 Cold shock-like protein CspE sig. 38 33
  Burkholderia phytofirmans PsJN BPHYT_RS17545 cold-shock protein sig. 39 32
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05686 cold-shock DNA-binding protein family no data 39 32
  Paraburkholderia graminis OAS925 ABIE53_003669 CspA family cold shock protein strong 39 32
  Escherichia coli BL21 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein insig. 38 33
  Escherichia fergusonii Becca EFB2_03468 Cold shock-like protein CspE insig. 38 33
  Escherichia coli ECOR27 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE insig. 38 33
  Escherichia coli ECOR38 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE cofit 38 33
  Escherichia coli ECRC100 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE cofit 38 33
  Escherichia coli ECRC101 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE cofit 38 33
  Escherichia coli ECRC102 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE sig. 38 33
  Escherichia coli ECRC62 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE insig. 38 33
  Escherichia coli ECRC98 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE cofit 38 33
  Escherichia coli ECRC99 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE no data 38 33