Conservation of cofitness between Xcc-8004.558.1 and Xcc-8004.4903.1 in Xanthomonas campestris pv. campestris strain 8004

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.558.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 1.0 Xcc-8004.4903.1 Oxidoreductase 0.31 14
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS29305 short-chain dehydrogenase 0.27 RR42_RS36075 oxidoreductase low > 128
Ralstonia solanacearum GMI1000 0.69 RS_RS16080 oxidoreductase 0.51 RS_RS03675 NAD(P)-dependent oxidoreductase low > 80
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS20890 oxidoreductase 0.50 RALBFv3_RS12900 NAD(P)-dependent oxidoreductase low > 76
Ralstonia solanacearum UW163 0.69 UW163_RS22025 oxidoreductase 0.50 UW163_RS00665 NAD(P)-dependent oxidoreductase — —
Dickeya dianthicola ME23 0.68 DZA65_RS08505 oxidoreductase 0.54 DZA65_RS11160 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 75
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS17640 oxidoreductase 0.52 ABZR87_RS08960 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG 0.25 41
Dickeya dianthicola 67-19 0.67 HGI48_RS07910 oxidoreductase 0.54 HGI48_RS10690 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 71
Ralstonia solanacearum PSI07 0.66 RPSI07_RS15460 oxidoreductase 0.51 RPSI07_RS20325 NAD(P)-dependent oxidoreductase low > 81
Dickeya dadantii 3937 0.66 DDA3937_RS03805 oxidoreductase 0.54 DDA3937_RS10695 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 74
Pseudomonas aeruginosa PA14 0.66 IKLFDK_06525 short-chain dehydrogenase/reductase 0.60 IKLFDK_29015 NAD(P)-dependent oxidoreductase low > 100
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS10170 oxidoreductase 0.51 BPHYT_RS03720 malonic semialdehyde reductase low > 109
Azospirillum sp. SherDot2 0.43 MPMX19_03857 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase 0.65 MPMX19_02817 Serine 3-dehydrogenase low > 112
Pectobacterium carotovorum WPP14 0.41 HER17_RS14300 oxidoreductase 0.54 HER17_RS10705 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 75
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS16275 oxidoreductase 0.56 PFLU_RS02750 SDR family oxidoreductase low > 109
Pseudomonas fluorescens SBW25 0.40 PFLU_RS16275 oxidoreductase 0.56 PFLU_RS02750 SDR family oxidoreductase low > 109
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_3541 Short-chain dehydrogenase/reductase SDR 0.60 Psyr_0602 Short-chain dehydrogenase/reductase SDR 0.27 77
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_3541 Short-chain dehydrogenase/reductase SDR 0.60 Psyr_0602 Short-chain dehydrogenase/reductase SDR low > 86
Enterobacter sp. TBS_079 0.40 MPMX20_02560 hypothetical protein 0.53 MPMX20_02099 NADP-dependent 3-hydroxy acid dehydrogenase YdfG low > 85
Rahnella sp. WP5 0.39 EX31_RS11050 oxidoreductase 0.51 EX31_RS07075 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 89
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS14420 oxidoreductase 0.53 PagCFBP13505_RS06350 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 74
Bosea sp. OAE506 0.39 ABIE41_RS17685 oxidoreductase 0.63 ABIE41_RS08870 SDR family NAD(P)-dependent oxidoreductase low > 77
Pantoea sp. MT58 0.37 IAI47_20865 oxidoreductase 0.53 IAI47_09805 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 76
Cellulophaga baltica 18 0.29 M666_RS15025 SDR family oxidoreductase 0.42 M666_RS03935 SDR family NAD(P)-dependent oxidoreductase — —
Sinorhizobium meliloti 1021 0.29 SMa0326 short chain alcohol dehydrogenase-related dehydrogenase 0.26 SMa0320 short chain alcohol dehydrogenase-related dehydrogenase low > 103
Bacteroides thetaiotaomicron VPI-5482 0.28 BT0972 putative oxidoreductase (NCBI ptt file) 0.39 BT0409 putative short-chain dehydrogenase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.28 BACOVA_00778 oxidoreductase, short chain dehydrogenase/reductase family protein 0.44 BACOVA_01762 hypothetical protein low > 96
Agrobacterium fabrum C58 0.24 Atu3591 short chain dehydrogenase 0.71 Atu4110 serine dehydrogenase low > 89
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_01158 hypothetical protein 0.56 GEMAOFIL_00773 Sulfoacetaldehyde reductase low > 93
Erwinia tracheiphila SCR3 0.23 LU632_RS15270 SDR family oxidoreductase 0.54 LU632_RS11720 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 74
Erwinia tracheiphila HP pepo 2.2 0.22 IJEDHG_01045 SDR family oxidoreductase 0.54 IJEDHG_22840 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 61
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_996 Oxidoreductase, short chain dehydrogenase/reductase family 0.56 Pf1N1B4_1376 Oxidoreductase, short chain dehydrogenase/reductase family low > 87
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2466 Short-chain dehydrogenases of various substrate specificities 0.53 EX28DRAFT_1450 Short-chain alcohol dehydrogenase of unknown specificity — —
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_0911 Short-chain dehydrogenases of various substrate specificities 0.53 B158DRAFT_0585 Short-chain alcohol dehydrogenase of unknown specificity low > 40
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_1672 Oxidoreductase, short chain dehydrogenase/reductase family 0.56 PfGW456L13_117 Oxidoreductase, short chain dehydrogenase/reductase family low > 87
Klebsiella pneumoniae MKP103 0.21 KDGMDA_14980 SDR family oxidoreductase 0.59 KDGMDA_15920 Sulfoacetaldehyde reductase low > 95
Erwinia amylovora T8 0.21 OLJFJH_17680 SDR family oxidoreductase 0.54 OLJFJH_14250 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF4411 Putative NAD(P)-dependent oxidoreductase EC-YbbO 0.53 GFF2497 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) low > 78
Escherichia coli Nissle 1917 0.20 ECOLIN_RS02915 NADP(+)-dependent aldehyde reductase 0.52 ECOLIN_RS08810 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG — —
Escherichia coli ECRC101 0.20 MCAODC_27195 ybbO NADP(+)-dependent aldehyde reductase 0.52 MCAODC_16910 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 88
Escherichia coli ECRC100 0.20 OKFHMN_07980 ybbO NADP(+)-dependent aldehyde reductase 0.52 OKFHMN_01015 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 79
Escherichia coli ECRC102 0.20 NIAGMN_06030 ybbO NADP(+)-dependent aldehyde reductase 0.52 NIAGMN_25160 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_03181 hypothetical protein 0.52 OHPLBJKB_02173 NADP-dependent 3-hydroxy acid dehydrogenase YdfG low > 74
Escherichia coli BW25113 0.20 b0493 ybbO short chain dehydrogenase (NCBI) 0.52 b1539 ydfG L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECRC98 0.20 JDDGAC_11625 ybbO NADP(+)-dependent aldehyde reductase 0.52 JDDGAC_03525 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 87
Escherichia fergusonii Becca 0.20 EFB2_03562 hypothetical protein 0.52 EFB2_02417 NADP-dependent 3-hydroxy acid dehydrogenase YdfG low > 86
Escherichia coli ECRC99 0.20 KEDOAH_19990 ybbO NADP(+)-dependent aldehyde reductase 0.52 KEDOAH_27415 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG — —
Escherichia coli ECRC62 0.20 BNILDI_22390 ybbO NADP(+)-dependent aldehyde reductase 0.52 BNILDI_17130 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 75
Escherichia coli ECOR27 0.20 NOLOHH_00970 ybbO NADP(+)-dependent aldehyde reductase 0.52 NOLOHH_18640 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 76
Escherichia coli BL21 0.20 ECD_00444 putative oxidoreductase 0.52 ECD_01498 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase 0.32 39

Not shown: 9 genomes with orthologs for Xcc-8004.558.1 only; 50 genomes with orthologs for Xcc-8004.4903.1 only