Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.3537.1 in Xanthomonas campestris pv. campestris strain 8004

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.3537.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) 0.85 18
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.77 ABIE51_RS07005 asparagine synthase B 0.74 9
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.72 ABZR86_RS02815 asparagine synthase B 0.97 13
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.73 LRK55_RS18205 asparagine synthase B low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.73 LRK54_RS00305 asparagine synthase B 0.67 9
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.73 OKGIIK_07005 asnB asparagine synthase B low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.62 SO2767 asnB-1 asparagine synthetase B, glutamine-hydrolyzing (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.58 IAI46_06065 asparagine synthase B low > 86
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.61 CSW01_05055 asparagine synthase B low > 62
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.62 Shew_1509 asnB asparagine synthetase B (RefSeq) 0.84 10
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.62 Shewana3_2549 asnB asparagine synthetase B (RefSeq) low > 73
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.58 EX31_RS23245 asparagine synthase B — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.60 IAI47_13900 asparagine synthase B — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.59 BWI76_RS08180 asparagine synthase B low > 92
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.63 Sama_2101 asnB asparagine synthetase B (RefSeq) 0.75 9
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.59 HGI48_RS06340 asparagine synthase B — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.59 OHPLBJKB_03042 Asparagine synthetase B [glutamine-hydrolyzing] low > 73
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.59 b0674 asnB asparagine synthetase B (NCBI) low > 76
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.59 ECD_00631 asparagine synthetase B low > 61
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.59 EFB2_03429 Asparagine synthetase B [glutamine-hydrolyzing] low > 86
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.59 HEPCGN_01050 asnB asparagine synthase B low > 87
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.59 ECOLIN_RS03600 asparagine synthase B low > 55
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.59 DZA65_RS06685 asparagine synthase B — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.59 JDDGAC_10830 asnB asparagine synthase B low > 86
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.59 KEDOAH_20790 asnB asparagine synthase B — —
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.59 NIAGMN_05235 asnB asparagine synthase B — —
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.59 MCAODC_26395 asnB asparagine synthase B low > 87
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.59 OKFHMN_07180 asnB asparagine synthase B low > 80
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.59 EX28DRAFT_2301 asparagine synthase (glutamine-hydrolyzing) low > 76
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.59 HER17_RS15120 asparagine synthase B low > 75
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.59 NOLOHH_23560 asnB asparagine synthase B low > 75
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.59 BNILDI_21565 asnB asparagine synthase B low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.59 GFF4582 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 78
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.59 MPMX20_01320 Asparagine synthetase B [glutamine-hydrolyzing] low > 85
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.59 LU632_RS16265 asnB asparagine synthase B — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.50 GFF1173 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 90
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.58 MIT1002_01266 Asparagine synthetase B [glutamine-hydrolyzing] — —
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.14 MMP_RS04765 asparagine synthase (glutamine-hydrolyzing) — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.14 MMJJ_RS00370 asparagine synthase (glutamine-hydrolyzing) — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.58 BACOVA_03758 asparagine synthase (glutamine-hydrolyzing) — —

Not shown: 55 genomes with orthologs for Xcc-8004.5020.1 only; 5 genomes with orthologs for Xcc-8004.3537.1 only