| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 1.0 | TX73_021705 | | sigma-54 dependent transcriptional regulator | 0.49 | 20 |
| Rhizobium sp. OAE497 | 0.71 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.47 | ABIE40_RS16175 | | sigma-54 dependent transcriptional regulator | low | > 107 |
| Bosea sp. OAE506 | 0.70 | ABIE41_RS03875 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.58 | ABIE41_RS06145 | | sigma-54 dependent transcriptional regulator | low | > 77 |
| Agrobacterium fabrum C58 | 0.70 | Atu0050 | | two component response regulator | 0.49 | Atu3764 | | sigma 54 dependent transcriptional activator | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.68 | SMc02584 | | transcriptional regulator | 0.49 | SMc04011 | | sigma-54-dependent transcription regulator protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.66 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.28 | Dshi_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.62 | MPMX19_05623 | | Photosynthetic apparatus regulatory protein RegA | 0.33 | MPMX19_02733 | | Regulatory protein LuxO | low | > 112 |
| Azospirillum brasilense Sp245 | 0.60 | AZOBR_RS03415 | | chemotaxis protein CheY | 0.32 | AZOBR_RS01060 | | ATPase AAA | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.54 | A4249_RS15075 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.48 | A4249_RS09115 | | sigma-54 dependent transcriptional regulator | low | > 48 |
| Caulobacter crescentus NA1000 | 0.50 | CCNA_00247 | | two-component receiver protein SpdR | 0.50 | CCNA_03424 | | AAA-family response regulator tacA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.50 | CCNA_00247 | | two-component receiver protein SpdR | 0.50 | CCNA_03424 | | AAA-family response regulator tacA | low | > 67 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS10115 | | response regulator transcription factor | 0.29 | ABZR86_RS11070 | | sigma-54 dependent transcriptional regulator | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.30 | PfGW456L13_4355 | | Flagellar regulatory protein FleQ | low | > 87 |
| Pseudomonas putida KT2440 | 0.42 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.30 | PP_4371 | | two component system AtoC DNA-binding transcriptional activator | low | > 96 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.31 | PFR28_00830 | | Regulatory protein AtoC | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_05335 | | chemotaxis protein CheY | 0.32 | AO353_16225 | | Fis family transcriptional regulator | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.32 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.32 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.31 | Pf6N2E2_2595 | | Flagellar regulatory protein FleQ | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_04100 | | chemotaxis protein CheY | 0.32 | PS417_05525 | | Fis family transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS00325 | | response regulator transcription factor | 0.29 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.29 | BPHYT_RS02520 | | Fis family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.38 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.30 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | — | — |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_000420 | | two-component system response regulator RegA | 0.30 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | — | — |
| Variovorax sp. SCN45 | 0.38 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.30 | GFF3669 | | Two-component system response regulator protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.36 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.30 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.36 | UW163_RS03965 | | DNA-binding response regulator | 0.30 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.36 | RS_RS00200 | | DNA-binding response regulator | 0.30 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS05135 | | response regulator transcription factor | 0.30 | ABZR87_RS06635 | | sigma-54 dependent transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.36 | RPSI07_RS23750 | | DNA-binding response regulator | 0.30 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3147 | | Dna binding response regulator PrrA (RegA) | 0.29 | Ac3H11_4019 | | Sigma-54 dependent transcriptional regulator | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.32 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.42 | Ga0059261_1969 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 68 |
Not shown: 22 genomes with orthologs for TX73_002960 only; 23 genomes with orthologs for TX73_021705 only