| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_016655 | | replication-associated recombination protein A | 1.0 | TX73_016660 | | DegQ family serine endoprotease | 0.44 | 3 |
| Sinorhizobium meliloti 1021 | 0.77 | SMc01279 | | recombination factor protein RarA | 0.47 | SMc01280 | | protease | 0.27 | 78 |
| Agrobacterium fabrum C58 | 0.74 | Atu1914 | | ATPase, AAA family protein | 0.50 | Atu1915 | | htrA family protein | 0.16 | 67 |
| Rhizobium sp. OAE497 | 0.73 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.50 | ABIE40_RS08040 | | DegQ family serine endoprotease | low | > 107 |
| Bosea sp. OAE506 | 0.73 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.53 | ABIE41_RS14685 | | Do family serine endopeptidase | — | — |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.42 | Rru_A2662 | | Peptidase S1C, Do (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS07890 | | replication-associated recombination protein A | 0.42 | A4249_RS07900 | | Do family serine endopeptidase | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.59 | CCNA_01342 | | ATPase, AAA family | 0.37 | CCNA_01341 | | DegP/HtrA-family serine protease | low | > 67 |
| Caulobacter crescentus NA1000 | 0.59 | CCNA_01342 | | ATPase, AAA family | 0.37 | CCNA_01341 | | DegP/HtrA-family serine protease | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c01930 | | replication-associated recombination protein A | 0.36 | PGA1_c01920 | | protease DegQ | 0.64 | 1 |
| Magnetospirillum magneticum AMB-1 | 0.57 | AMB_RS17620 | | replication-associated recombination protein A | 0.47 | AMB_RS17615 | | PDZ domain-containing protein | low | > 64 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.30 | OKGIIK_00150 | | Periplasmic serine endoprotease DegP-like | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS17545 | | replication-associated recombination protein A | 0.29 | LRK55_RS06175 | | Do family serine endopeptidase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS17320 | | replication-associated recombination protein A | 0.29 | LRK54_RS06430 | | Do family serine endopeptidase | low | > 59 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.30 | Shewana3_0690 | | peptidase Do (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.44 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.28 | Shew_3296 | | protease Do (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.44 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.30 | SO3942 | | serine protease, HtrA/DegQ/DegS family (NCBI ptt file) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.33 | ABZR86_RS17545 | | DegQ family serine endoprotease | low | > 74 |
| Shewanella amazonensis SB2B | 0.44 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.29 | Sama_3073 | | serine protease (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS09620 | | replication-associated recombination protein A | 0.28 | HGI48_RS01520 | | serine endoprotease DegQ | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS09930 | | replication-associated recombination protein A | 0.28 | DZA65_RS01585 | | serine endoprotease DegQ | low | > 75 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.28 | DDA3937_RS01605 | | serine endoprotease DegQ | low | > 74 |
| Rahnella sp. WP5 | 0.43 | EX31_RS18515 | | replication-associated recombination protein A | 0.28 | EX31_RS12475 | | Do family serine endopeptidase | low | > 89 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_08570 | | replication-associated recombination protein A | 0.28 | IAI46_03585 | | serine endoprotease DegP | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.28 | Xcc-8004.4948.1 | | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS12345 | | replication-associated recombination protein A | 0.28 | HER17_RS19985 | | serine endoprotease DegQ | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.29 | GFF2974 | | Outer membrane stress sensor protease DegQ, serine protease | low | > 78 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.28 | NOLOHH_09605 | degQ | serine endoprotease DegQ | low | > 75 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.28 | HEPCGN_16675 | degQ | serine endoprotease DegQ | low | > 87 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.28 | BNILDI_01930 | degQ | serine endoprotease DegQ | low | > 75 |
| Escherichia coli BW25113 | 0.42 | b0892 | ycaJ | recombination protein (NCBI) | 0.28 | b3234 | degQ | serine endoprotease, periplasmic (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.42 | EFB2_03169 | | Replication-associated recombination protein A | 0.28 | EFB2_00596 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 86 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.29 | OKFHMN_17805 | degQ | serine endoprotease DegQ | low | > 80 |
| Escherichia coli BL21 | 0.42 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.28 | ECD_03094 | | serine endoprotease, periplasmic | low | > 61 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.29 | NIAGMN_15565 | degQ | serine endoprotease DegQ | — | — |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.29 | JDDGAC_21430 | degQ | serine endoprotease DegQ | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.28 | OHPLBJKB_00470 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 73 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.29 | MCAODC_08325 | degQ | serine endoprotease DegQ | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.29 | KEDOAH_10345 | degQ | serine endoprotease DegQ | — | — |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.28 | ECOLIN_RS18545 | | serine endoprotease DegQ | low | > 55 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS09755 | | replication-associated recombination protein A | 0.27 | LU632_RS21355 | | Do family serine endopeptidase | low | > 74 |
| Pantoea sp. MT58 | 0.42 | IAI47_12900 | | replication-associated recombination protein A | 0.27 | IAI47_17260 | | serine endoprotease DegQ | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_05630 | | replication-associated recombination protein A | 0.29 | CSW01_03020 | | serine endoprotease DegQ | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_02178 | | Replication-associated recombination protein A | 0.28 | MIT1002_00842 | | Periplasmic pH-dependent serine endoprotease DegQ precursor | low | > 70 |
Not shown: 56 genomes with orthologs for TX73_016655 only; 0 genomes with orthologs for TX73_016660 only