| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS29055 | | AraC family transcriptional regulator | 1.0 | RR42_RS35915 | | beta-ketoadipyl CoA thiolase | 0.38 | 14 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS15620 | | helix-turn-helix domain-containing protein | 0.82 | QEN71_RS14170 | | 3-oxoadipyl-CoA thiolase | low | > 153 |
| Pseudomonas putida KT2440 | 0.32 | PP_3538 | | transcriptional regulator | 0.70 | PP_3280 | | 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | low | > 96 |
| Rhizobium sp. OAE497 | 0.31 | ABIE40_RS19570 | | helix-turn-helix domain-containing protein | 0.72 | ABIE40_RS19550 | | 3-oxoadipyl-CoA thiolase | low | > 107 |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS07430 | | helix-turn-helix domain-containing protein | 0.69 | PFLU_RS06735 | | 3-oxoadipyl-CoA thiolase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS07430 | | helix-turn-helix domain-containing protein | 0.69 | PFLU_RS06735 | | 3-oxoadipyl-CoA thiolase | 0.84 | 9 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3499 | | transcriptional regulator, AraC family | 0.71 | Psyr_4011 | | Thiolase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3499 | | transcriptional regulator, AraC family | 0.71 | Psyr_4011 | | Thiolase | low | > 86 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_001115 | | AraC family transcriptional activator of pobA | 0.85 | ABIE53_005177 | | acetyl-CoA acyltransferase | low | > 113 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_07325 | | AraC family transcriptional regulator | 0.68 | PS417_06710 | | beta-ketoadipyl CoA thiolase | low | > 88 |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_05530 | | hypothetical protein | 0.75 | MPMX19_05859 | | Beta-ketoadipyl-CoA thiolase | low | > 112 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.465.1 | | Transcriptional regulator PobR, AraC family | 0.62 | Xcc-8004.477.1 | | Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | low | > 74 |
| Pseudomonas sp. RS175 | 0.27 | PFR28_00546 | | HTH-type transcriptional activator RhaS | 0.70 | PFR28_00622 | | Beta-ketoadipyl-CoA thiolase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.27 | AO353_03890 | | AraC family transcriptional regulator | 0.70 | AO353_17205 | | beta-ketoadipyl CoA thiolase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.27 | Pf1N1B4_702 | | Transcriptional regulator PobR, AraC family | 0.69 | Pf1N1B4_3234 | | Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_1788 | | Transcriptional regulator PobR, AraC family | 0.70 | PfGW456L13_2430 | | Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_2188 | | AraC-type DNA-binding domain-containing proteins | 0.65 | Psest_3070 | | 3-oxoadipyl-CoA thiolase | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_2913 | | Transcriptional regulator PobR, AraC family | 0.68 | Pf6N2E2_2835 | | Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | 0.45 | 11 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c02800 | | putative transcriptional regulator, AraC family | 0.68 | PGA1_c04090 | | beta-ketoadipyl-CoA thiolase PaaJ | low | > 62 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_05290 | | AraC family transcriptional regulator | 0.68 | AO356_04930 | | beta-ketoadipyl CoA thiolase | low | > 104 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_3419 | | Transcriptional regulator PobR, AraC family | 0.75 | Ac3H11_3920 | | Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.25 | HSERO_RS19910 | | AraC family transcriptional regulator | 0.81 | HSERO_RS19990 | | acetyl-CoA acetyltransferase | low | > 78 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_02486 | | AraC-family transcriptional regulator | 0.71 | CCNA_02490 | | 3-ketoacyl-CoA thiolase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_02486 | | AraC-family transcriptional regulator | 0.71 | CCNA_02490 | | 3-ketoacyl-CoA thiolase | low | > 66 |
| Agrobacterium fabrum C58 | 0.24 | Atu4545 | | AraC family transcriptional regulator | 0.74 | Atu4549 | | beta-ketoadipyl CoA thiolase | 0.22 | 17 |
| Rhodopseudomonas palustris CGA009 | 0.23 | TX73_005185 | | helix-turn-helix domain-containing protein | 0.68 | TX73_002660 | | 3-oxoadipyl-CoA thiolase | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.21 | GFF447 | | Transcriptional regulator, AraC family | 0.79 | GFF678 | | Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) | low | > 90 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.20 | CA264_03710 | | AraC family transcriptional regulator | 0.54 | CA264_17720 | | beta-ketoadipyl CoA thiolase | low | > 74 |
| Escherichia coli ECRC62 | 0.20 | BNILDI_07850 | hpaA | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.69 | BNILDI_17900 | paaJ | bifunctional 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.20 | OHPLBJKB_03717 | | HTH-type transcriptional activator RhaR | 0.70 | OHPLBJKB_02314 | | 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | low | > 73 |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_03750 | hpaA | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.70 | NOLOHH_19445 | paaJ | bifunctional 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | low | > 75 |
| Serratia liquefaciens MT49 | 0.20 | IAI46_02765 | | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.69 | IAI46_16165 | | 3-oxoadipyl-CoA thiolase | low | > 86 |
| Klebsiella michiganensis M5al | 0.19 | BWI76_RS03835 | | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.72 | BWI76_RS16135 | | acetyl-CoA acetyltransferase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.19 | MPMX20_00635 | | HTH-type transcriptional activator RhaR | 0.69 | MPMX20_02151 | | 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_3540 | | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.68 | EX28DRAFT_1411 | | 3-oxoadipyl-CoA thiolase | low | > 76 |
Not shown: 11 genomes with orthologs for RR42_RS29055 only; 22 genomes with orthologs for RR42_RS35915 only