Conservation of cofitness between RR42_RS02080 and RR42_RS26840 in Cupriavidus basilensis FW507-4G11

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS02080 ribosome hibernation promoting factor 1.0 RR42_RS26840 DNA-binding protein 0.49 15
Ralstonia solanacearum GMI1000 0.87 RS_RS02015 ribosomal subunit interface protein 0.21 RS_RS00410 MurR/RpiR family transcriptional regulator low > 80
Ralstonia solanacearum IBSBF1503 0.85 RALBFv3_RS11165 ribosomal subunit interface protein 0.23 RALBFv3_RS15395 MurR/RpiR family transcriptional regulator low > 76
Ralstonia sp. UNC404CL21Col 0.85 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.21 ABZR87_RS04920 MurR/RpiR family transcriptional regulator low > 80
Ralstonia solanacearum UW163 0.85 UW163_RS02415 ribosomal subunit interface protein 0.23 UW163_RS12855 MurR/RpiR family transcriptional regulator — —
Ralstonia solanacearum PSI07 0.84 RPSI07_RS22135 ribosomal subunit interface protein 0.23 RPSI07_RS17960 MurR/RpiR family transcriptional regulator low > 81
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.48 QEN71_RS10985 MurR/RpiR family transcriptional regulator low > 153
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS02900 ribosome hibernation promoting factor 0.47 BPHYT_RS27175 DNA-binding protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.70 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P 0.51 H281DRAFT_02617 transcriptional regulator, RpiR family low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000717 putative sigma-54 modulation protein 0.47 ABIE53_005821 DNA-binding MurR/RpiR family transcriptional regulator low > 113
Variovorax sp. SCN45 0.62 GFF7293 Ribosome hibernation promoting factor Hpf 0.46 GFF6654 Transcriptional regulator, RpiR family low > 127
Castellaniella sp019104865 MT123 0.47 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA 0.41 ABCV34_RS13380 MurR/RpiR family transcriptional regulator low > 48
Pseudomonas simiae WCS417 0.42 PS417_04340 ribosome hibernation promoting factor HPF 0.17 PS417_11845 RpiR family transcriptional regulator low > 88
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.18 Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.18 Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) low > 86
Alteromonas macleodii MIT1002 0.42 MIT1002_00826 Ribosome hibernation promoting factor 0.12 MIT1002_01597 putative DNA-binding transcriptional regulator low > 70
Pseudomonas fluorescens SBW25 0.41 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.17 PFLU_RS12580 MurR/RpiR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.17 PFLU_RS12580 MurR/RpiR family transcriptional regulator low > 109
Pseudomonas sp. RS175 0.41 PFR28_00172 Ribosome hibernation promoting factor 0.18 PFR28_02426 HTH-type transcriptional regulator MurR low > 88
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_05185 hypothetical protein 0.18 AO353_21330 RpiR family transcriptional regulator 0.24 68
Pseudomonas putida KT2440 0.40 PP_0951 Ribosome hibernation promoting factor 0.11 PP_3592 Transcriptional regulator, RpiR family low > 96
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.17 Pf6N2E2_510 Predicted transcriptional regulator of the myo-inositol catabolic operon low > 103
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1081 Ribosome hibernation protein YhbH 0.18 Pf1N1B4_4273 Predicted transcriptional regulator of the myo-inositol catabolic operon low > 87
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_07040 hypothetical protein 0.17 AO356_23155 RpiR family transcriptional regulator low > 104
Serratia liquefaciens MT49 0.38 IAI46_22475 ribosome hibernation promoting factor 0.20 IAI46_24010 MurR/RpiR family transcriptional regulator low > 86
Pectobacterium carotovorum WPP14 0.36 HER17_RS20065 ribosome hibernation promoting factor 0.20 HER17_RS14445 MurR/RpiR family transcriptional regulator low > 75
Klebsiella michiganensis M5al 0.36 BWI76_RS25270 ribosome hibernation promoting factor 0.36 BWI76_RS14460 MurR/RpiR family transcriptional regulator low > 92
Pantoea sp. MT58 0.35 IAI47_17190 ribosome hibernation promoting factor 0.19 IAI47_01475 MurR/RpiR family transcriptional regulator low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF2947 Ribosome hibernation protein YhbH 0.17 GFF883 Predicted transcriptional regulator of the myo-inositol catabolic operon 0.83 55
Dickeya dianthicola ME23 0.32 DZA65_RS01505 ribosome hibernation promoting factor 0.19 DZA65_RS03850 MurR/RpiR family transcriptional regulator 0.29 34
Dickeya dianthicola 67-19 0.32 HGI48_RS01440 ribosome hibernation promoting factor 0.19 HGI48_RS03725 SIS domain-containing protein low > 71
Dickeya dadantii 3937 0.32 DDA3937_RS01525 ribosome hibernation promoting factor 0.20 DDA3937_RS03665 MurR/RpiR family transcriptional regulator low > 74
Enterobacter sp. TBS_079 0.31 MPMX20_04109 Ribosome hibernation promoting factor 0.19 MPMX20_03376 HTH-type transcriptional regulator MurR low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_3257 ribosomal subunit interface protein 0.19 EX28DRAFT_0146 transcriptional regulator, RpiR family low > 76

Not shown: 37 genomes with orthologs for RR42_RS02080 only; 6 genomes with orthologs for RR42_RS26840 only