Conservation of cofitness between RR42_RS03415 and RR42_RS14080 in Cupriavidus basilensis FW507-4G11

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS03415 N-acetylmuramoyl-L-alanine amidase 1.0 RR42_RS14080 RNA polymerase sigma factor RpoE 0.49 6
Ralstonia solanacearum PSI07 0.69 RPSI07_RS12185 N-acetylmuramoyl-L-alanine amidase 0.97 RPSI07_RS19015 RNA polymerase sigma factor RpoE low > 81
Ralstonia solanacearum GMI1000 0.69 RS_RS12730 N-acetylmuramoyl-L-alanine amidase 0.97 RS_RS05225 RNA polymerase sigma factor RpoE low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS08515 N-acetylmuramoyl-L-alanine amidase 0.97 UW163_RS11910 RNA polymerase sigma factor RpoE — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS05110 N-acetylmuramoyl-L-alanine amidase 0.97 RALBFv3_RS14445 RNA polymerase sigma factor RpoE low > 76
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS00765 N-acetylmuramoyl-L-alanine amidase 0.95 ABZR87_RS10165 RNA polymerase sigma factor RpoE low > 80
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS15970 N-acetylmuramoyl-L-alanine amidase 0.87 BPHYT_RS14405 RNA polymerase sigma factor RpoE — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS02735 N-acetylmuramoyl-L-alanine amidase 0.87 QEN71_RS04575 RNA polymerase sigma factor RpoE — —
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04130 N-acetylmuramoyl-L-alanine amidase 0.86 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE — —
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS04210 N-acetylmuramoyl-L-alanine amidase 0.81 HSERO_RS09625 RNA polymerase sigma factor RpoE — —
Paraburkholderia graminis OAS925 0.54 ABIE53_003365 N-acetylmuramoyl-L-alanine amidase 0.87 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) 0.42 93
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF5476 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.56 GFF3339 RNA polymerase sigma factor RpoE 0.49 35
Dechlorosoma suillum PS 0.48 Dsui_3500 N-acetylmuramoyl-L-alanine amidase 0.78 Dsui_2453 RNA polymerase sigma factor RpoE — —
Variovorax sp. SCN45 0.45 GFF4803 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.57 GFF3863 RNA polymerase sigma factor RpoE low > 127
Pectobacterium carotovorum WPP14 0.35 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC 0.60 HER17_RS05780 RNA polymerase sigma factor RpoE — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_308 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.59 Ac3H11_1573 RNA polymerase sigma factor RpoE — —
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase 0.61 EX28DRAFT_0072 RNA polymerase sigma factor RpoE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.62 GFF2107 RNA polymerase sigma factor RpoE — —
Enterobacter sp. TBS_079 0.33 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC 0.61 MPMX20_03444 ECF RNA polymerase sigma-E factor — —
Escherichia coli BW25113 0.33 b2817 b2817 putative amidase (VIMSS) 0.62 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) — —
Escherichia coli ECOR38 0.33 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC102 0.33 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC101 0.33 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli Nissle 1917 0.33 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC 0.62 ECOLIN_RS14560 RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC98 0.33 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECOR27 0.33 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC100 0.33 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC62 0.33 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC99 0.33 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.62 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC 0.62 OHPLBJKB_01134 ECF RNA polymerase sigma-E factor — —
Escherichia fergusonii Becca 0.33 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC 0.62 EFB2_01323 ECF RNA polymerase sigma-E factor — —
Escherichia coli BL21 0.33 ECD_02665 N-acetylmuramoyl-L-alanine amidase 0.62 ECD_02467 RNA polymerase sigma E factor — —
Dickeya dadantii 3937 0.32 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase 0.61 DDA3937_RS15765 RNA polymerase sigma factor RpoE low > 74
Variovorax sp. OAS795 0.32 ABID97_RS20295 N-acetylmuramoyl-L-alanine amidase 0.57 ABID97_RS08330 RNA polymerase sigma factor RpoE low > 91
Klebsiella michiganensis M5al 0.31 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase 0.60 BWI76_RS21355 RNA polymerase sigma factor RpoE — —
Pseudomonas stutzeri RCH2 0.25 Psest_0680 N-acetylmuramoyl-L-alanine amidase 0.61 Psest_3100 RNA polymerase sigma factor RpoE — —
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.60 AO356_04575 RNA polymerase subunit sigma low > 104
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.60 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT low > 87
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_13130 N-acetylmuramoyl-L-alanine amidase 0.60 AO353_17625 RNA polymerase subunit sigma 0.30 28
Castellaniella sp019104865 MT123 0.17 ABCV34_RS08775 N-acetylmuramoyl-L-alanine amidase 0.69 ABCV34_RS08355 RNA polymerase sigma factor RpoE — —

Not shown: 0 genomes with orthologs for RR42_RS03415 only; 45 genomes with orthologs for RR42_RS14080 only