Conservation of cofitness between RR42_RS23540 and RR42_RS04350 in Cupriavidus basilensis FW507-4G11

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS23540 alpha-ketoglutarate-dependent dioxygenase 1.0 RR42_RS04350 ABC transporter ATP-binding protein 0.40 1
Marinobacter adhaerens HP15 0.62 HP15_1028 alkylated DNA repair protein AlkB 0.56 HP15_749 iron(III) ABC transporter, ATP-binding protein low > 73
Acidovorax sp. GW101-3H11 0.61 Ac3H11_2181 Alkylated DNA repair protein AlkB 0.55 Ac3H11_3972 Ferric iron ABC transporter, ATP-binding protein low > 79
Escherichia coli BL21 0.57 ECD_02139 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions 0.33 ECD_00860 putrescine ABC transporter ATPase low > 61
Enterobacter sp. TBS_079 0.57 MPMX20_03172 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.34 MPMX20_01496 Spermidine/putrescine import ATP-binding protein PotA low > 85
Dickeya dadantii 3937 0.57 DDA3937_RS04560 DNA oxidative demethylase AlkB 0.35 DDA3937_RS09465 putrescine ABC transporter ATP-binding subunit PotG low > 74
Dechlorosoma suillum PS 0.57 Dsui_3098 alkylated DNA repair protein 0.61 Dsui_2943 ABC-type spermidine/putrescine transport system, ATPase component — —
Dickeya dianthicola ME23 0.57 DZA65_RS04440 DNA oxidative demethylase AlkB 0.34 DZA65_RS09795 putrescine ABC transporter ATP-binding subunit PotG low > 75
Variovorax sp. SCN45 0.57 GFF782 Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33) 0.35 GFF1463 Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1) low > 127
Escherichia coli ECRC99 0.57 KEDOAH_04970 alkB DNA oxidative demethylase AlkB 0.33 KEDOAH_21955 potG putrescine ABC transporter ATP-binding subunit PotG — —
Escherichia coli ECRC102 0.57 NIAGMN_20980 alkB DNA oxidative demethylase AlkB 0.33 NIAGMN_04000 potG putrescine ABC transporter ATP-binding subunit PotG — —
Escherichia coli ECRC100 0.57 OKFHMN_23215 alkB DNA oxidative demethylase AlkB 0.33 OKFHMN_05955 potG putrescine ABC transporter ATP-binding subunit PotG low > 80
Escherichia coli ECRC98 0.57 JDDGAC_27175 alkB DNA oxidative demethylase AlkB 0.33 JDDGAC_09590 potG putrescine ABC transporter ATP-binding subunit PotG low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS17090 DNA oxidative demethylase AlkB 0.35 HER17_RS05520 ABC transporter ATP-binding protein low > 75
Escherichia coli ECRC101 0.57 MCAODC_14265 alkB DNA oxidative demethylase AlkB 0.33 MCAODC_25170 potG putrescine ABC transporter ATP-binding subunit PotG low > 87
Rahnella sp. WP5 0.56 EX31_RS03140 DNA oxidative demethylase AlkB 0.33 EX31_RS09625 putrescine ABC transporter ATP-binding subunit PotG low > 89
Escherichia coli BW25113 0.56 b2212 alkB oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) 0.33 b0855 potG ATP-binding component of putrescine transport system (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_01498 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.33 OHPLBJKB_02813 Spermidine/putrescine import ATP-binding protein PotA low > 73
Escherichia coli Nissle 1917 0.56 ECOLIN_RS26540 DNA oxidative demethylase AlkB 0.33 ECOLIN_RS04555 putrescine ABC transporter ATP-binding subunit PotG — —
Escherichia fergusonii Becca 0.56 EFB2_01643 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.33 EFB2_03206 Spermidine/putrescine import ATP-binding protein PotA low > 86
Escherichia coli ECOR38 0.56 HEPCGN_22480 alkB DNA oxidative demethylase AlkB 0.33 HEPCGN_02075 potG putrescine ABC transporter ATP-binding subunit PotG low > 87
Escherichia coli ECRC62 0.56 BNILDI_13710 alkB DNA oxidative demethylase AlkB 0.33 BNILDI_20580 potG putrescine ABC transporter ATP-binding subunit PotG low > 75
Escherichia coli ECOR27 0.56 NOLOHH_14790 alkB DNA oxidative demethylase AlkB 0.33 NOLOHH_22325 potG putrescine ABC transporter ATP-binding subunit PotG low > 75
Dickeya dianthicola 67-19 0.55 HGI48_RS04520 DNA oxidative demethylase AlkB 0.34 HGI48_RS09485 putrescine ABC transporter ATP-binding subunit PotG low > 71
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0364 Alkylated DNA repair protein 0.34 EX28DRAFT_2098 spermidine/putrescine ABC transporter ATP-binding subunit low > 76
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_5023 Alkylated DNA repair protein AlkB 0.56 Pf1N1B4_763 Ferric iron ABC transporter, ATP-binding protein low > 87
Pseudomonas putida KT2440 0.55 PP_3400 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase 0.55 PP_1078 putative ABC transporter, ATP-binding protein low > 96
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_27010 alpha-ketoglutarate-dependent dioxygenase 0.56 AO353_04160 iron ABC transporter ATP-binding protein low > 101
Pantoea sp. MT58 0.54 IAI47_06530 DNA oxidative demethylase AlkB 0.34 IAI47_13040 putrescine ABC transporter ATP-binding subunit PotG low > 76
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_2915 Alkylated DNA repair protein AlkB 0.55 PfGW456L13_1738 Ferric iron ABC transporter, ATP-binding protein low > 87
Klebsiella michiganensis M5al 0.54 BWI76_RS19890 alpha-ketoglutarate-dependent dioxygenase AlkB 0.33 BWI76_RS09465 polyamine ABC transporter ATP-binding protein low > 92
Pseudomonas sp. RS175 0.54 PFR28_02492 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.55 PFR28_03364 Vitamin B12 import ATP-binding protein BtuD low > 88
Pseudomonas fluorescens SBW25 0.53 PFLU_RS14510 DNA oxidative demethylase AlkB 0.53 PFLU_RS05675 ABC transporter ATP-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS14510 DNA oxidative demethylase AlkB 0.53 PFLU_RS05675 ABC transporter ATP-binding protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_437 Alkylated DNA repair protein AlkB 0.56 Pf6N2E2_5578 Ferric iron ABC transporter, ATP-binding protein low > 103
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_2985 DNA-N1-methyladenine dioxygenase 0.54 Psyr_3902 ABC transporter:TOBE low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_2985 DNA-N1-methyladenine dioxygenase 0.54 Psyr_3902 ABC transporter:TOBE low > 86
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS08355 dioxygenase 0.53 HSERO_RS16590 ABC transporter ATP-binding protein low > 78
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_22760 alpha-ketoglutarate-dependent dioxygenase 0.54 AO356_18270 iron ABC transporter ATP-binding protein low > 104
Pseudomonas simiae WCS417 0.52 PS417_14100 alpha-ketoglutarate-dependent dioxygenase 0.52 PS417_05590 iron ABC transporter ATP-binding protein low > 88
Dinoroseobacter shibae DFL-12 0.32 Dshi_3572 2OG-Fe(II) oxygenase (RefSeq) 0.34 Dshi_1341 ABC transporter related (RefSeq) — —

Not shown: 20 genomes with orthologs for RR42_RS23540 only; 12 genomes with orthologs for RR42_RS04350 only