| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 1.0 | Psyr_3876 | | amino acid ABC transporter membrane protein 2, PAAT family | 0.47 | 9 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 1.00 | Psyr_3876 | | amino acid ABC transporter membrane protein 2, PAAT family | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.75 | AO353_02165 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.91 | AO353_16960 | | amino acid ABC transporter permease | low | > 101 |
| Pseudomonas sp. DMC3 | 0.75 | GFF4698 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.91 | GFF2145 | | Histidine transport system permease protein HisM | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.75 | Pf6N2E2_2541 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.90 | Pf6N2E2_2960 | | ABC transporter for L-Lysine, permease component 2 (from data) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.74 | Pf1N1B4_373 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.90 | Pf1N1B4_3177 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_03570 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.91 | AO356_05505 | | ABC transporter for L-Lysine, permease component 2 (from data) | 0.33 | 22 |
| Pseudomonas fluorescens GW456-L13 | 0.74 | PfGW456L13_2155 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.91 | PfGW456L13_4637 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.73 | PS417_19225 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.92 | PS417_06405 | | amino acid ABC transporter permease | low | > 88 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_00884 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.90 | PFR28_00505 | | Histidine transport system permease protein HisM | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.73 | GEMAOFIL_02096 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.92 | GEMAOFIL_01451 | | Histidine transport system permease protein HisM | 0.55 | 46 |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.91 | PFLU_RS06470 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.91 | PFLU_RS06470 | | ABC transporter permease | low | > 109 |
| Pseudomonas sp. SVBP6 | 0.71 | COO64_RS06835 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.89 | COO64_RS16950 | | ABC transporter permease | low | > 93 |
| Pseudomonas orientalis W4I3 | 0.71 | QF045_RS21225 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.92 | QF045_RS09250 | | ABC transporter permease | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.62 | IKLFDK_17740 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | IKLFDK_14860 | | amino acid ABC transporter permease | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.62 | DQ20_RS41435 | mnmC;go_function=tRNA | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | DQ20_RS33225 | | ABC transporter permease | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.62 | DY961_RS15640 | mnmC;go_function=tRNA | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | DY961_RS02365 | | ABC transporter permease | low | > 100 |
| Pantoea agglomerans CFBP13505 P0401 | 0.33 | PagCFBP13505_RS00130 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | PagCFBP13505_RS00250 | | ABC transporter permease subunit | low | > 74 |
| Pantoea sp. MT58 | 0.32 | IAI47_06175 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | IAI47_06295 | | ABC transporter permease | low | > 76 |
| Escherichia coli ECRC100 | 0.32 | OKFHMN_22640 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | OKFHMN_22740 | hisM | Histidine transport system permease protein HisM | low | > 79 |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_26600 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | JDDGAC_26700 | hisM | Histidine transport system permease protein HisM | low | > 87 |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_05555 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | KEDOAH_05455 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli ECRC101 | 0.32 | MCAODC_13680 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | MCAODC_13780 | hisM | Histidine transport system permease protein HisM | low | > 87 |
| Escherichia coli BL21 | 0.32 | ECD_02249 | | fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme | 0.64 | ECD_02232 | | histidine ABC transporter permease | low | > 61 |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_20415 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | NIAGMN_20510 | hisM | Histidine transport system permease protein HisM | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.32 | OHPLBJKB_01381 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.63 | OHPLBJKB_01398 | | Histidine transport system permease protein HisM | low | > 74 |
| Escherichia coli BW25113 | 0.32 | b2324 | b2324 | putative peptidase (VIMSS) | 0.64 | b2307 | hisM | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.32 | NOLOHH_14275 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | NOLOHH_14360 | hisM | Histidine transport system permease protein HisM | low | > 76 |
| Escherichia coli ECRC62 | 0.32 | BNILDI_13195 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | BNILDI_13280 | hisM | Histidine transport system permease protein HisM | 0.47 | 72 |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_21845 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | HEPCGN_21935 | hisM | Histidine transport system permease protein HisM | low | > 88 |
| Escherichia fergusonii Becca | 0.31 | EFB2_01534 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.64 | EFB2_01551 | | Histidine transport system permease protein HisM | low | > 86 |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS13465 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.64 | ECOLIN_RS13380 | | ABC transporter permease | low | > 55 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0280 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | 0.63 | EX28DRAFT_0297 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF1945 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.63 | GFF1916 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 78 |
| Erwinia amylovora T8 | 0.30 | OLJFJH_11180 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.64 | OLJFJH_11300 | | amino acid ABC transporter permease | low | > 58 |
| Klebsiella pneumoniae MKP103 | 0.30 | KDGMDA_27245 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | KDGMDA_27160 | | histidine ABC transporter permease HisM | low | > 95 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_03259 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.63 | MPMX20_03242 | | Histidine transport system permease protein HisM | low | > 85 |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS20410 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.62 | BWI76_RS20325 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | low | > 92 |
| Rahnella sp. WP5 | 0.30 | EX31_RS19660 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | EX31_RS19550 | | ABC transporter permease | low | > 89 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_18000 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | IAI46_17790 | | ABC transporter permease | low | > 87 |
| Dickeya dianthicola 67-19 | 0.29 | HGI48_RS14485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.61 | HGI48_RS14385 | | ABC transporter permease | low | > 71 |
| Dickeya dianthicola ME23 | 0.29 | DZA65_RS15420 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.61 | DZA65_RS15315 | | ABC transporter permease | low | > 75 |
| Dickeya dadantii 3937 | 0.29 | DDA3937_RS14515 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.62 | DDA3937_RS14415 | | ABC transporter permease | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.28 | HER17_RS06960 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.63 | HER17_RS07040 | | ABC transporter permease | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.28 | ABIE53_000291 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.68 | ABIE53_001766 | | histidine transport system permease protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.28 | H281DRAFT_02360 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.71 | H281DRAFT_00222 | | amino acid ABC transporter membrane protein 2, PAAT family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.28 | BPHYT_RS19575 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.70 | BPHYT_RS05500 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS29485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.70 | QEN71_RS24875 | | ABC transporter permease | 0.35 | 122 |
| Acinetobacter baumannii LAC-4 | 0.23 | RR41_RS02870 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.69 | RR41_RS06090 | | ABC transporter permease | low | > 55 |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS09010 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.63 | RR42_RS29655 | | amino acid ABC transporter permease | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.16 | ABCV34_RS09580 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.60 | ABCV34_RS02175 | | histidine ABC transporter permease HisM | 0.56 | 45 |
Not shown: 28 genomes with orthologs for Psyr_3742 only; 1 genomes with orthologs for Psyr_3876 only