Conservation of cofitness between Psyr_4754 and Psyr_1799 in Pseudomonas syringae pv. syringae B728a

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.0 Psyr_1799 Protein of unknown function DUF6 0.26 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.00 Psyr_1799 Protein of unknown function DUF6 low > 86
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.72 Pf6N2E2_1547 Permease of the drug/metabolite transporter (DMT) superfamily low > 103
Pseudomonas sp. S08-1 0.72 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.10 OH686_07175 Permease of the drug/metabolite transporter (DMT) superfamily low > 80
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.72 AO356_23805 hypothetical protein low > 104
Pseudomonas sp. RS175 0.71 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.73 PFR28_02338 hypothetical protein low > 88
Pseudomonas simiae WCS417 0.70 PS417_26825 16S rRNA methyltransferase 0.13 PS417_07965 multidrug DMT transporter permease — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.10 OHPLBJKB_02180 putative amino-acid metabolite efflux pump low > 73
Escherichia fergusonii Becca 0.48 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.10 EFB2_02422 putative amino-acid metabolite efflux pump low > 86
Escherichia coli ECOR38 0.48 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.10 HEPCGN_26885 eamA O-acetylserine/cysteine exporter low > 87
Escherichia coli BW25113 0.48 b3465 yhhF predicted methyltransferase (NCBI) 0.10 b1533 ydeD orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.48 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.10 ECOLIN_RS08775 O-acetylserine/cysteine exporter — —
Escherichia coli ECRC62 0.48 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.10 BNILDI_17170 eamA O-acetylserine/cysteine exporter low > 75
Escherichia coli ECOR27 0.48 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.10 NOLOHH_18680 eamA O-acetylserine/cysteine exporter low > 75
Escherichia coli BL21 0.48 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.10 ECD_01492 cysteine and O-acetyl-L-serine efflux system low > 61
Escherichia coli ECRC101 0.48 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 MCAODC_16860 eamA O-acetylserine/cysteine exporter low > 87
Escherichia coli ECRC98 0.48 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 JDDGAC_03575 eamA O-acetylserine/cysteine exporter low > 86
Serratia liquefaciens MT49 0.48 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 IAI46_06900 DMT family transporter low > 86
Escherichia coli ECRC99 0.48 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 KEDOAH_27365 eamA O-acetylserine/cysteine exporter — —
Escherichia coli ECRC100 0.48 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 OKFHMN_01065 eamA O-acetylserine/cysteine exporter — —
Escherichia coli ECRC102 0.48 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.09 NIAGMN_25210 eamA O-acetylserine/cysteine exporter — —
Marinobacter adhaerens HP15 0.46 HP15_3491 conserved hypothetical protein 0.12 HP15_2671 permease of the drug/metabolite transporter (DMT) superfamily-like protein low > 73
Pantoea sp. MT58 0.44 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.63 IAI47_19135 DMT family transporter low > 76
Enterobacter sp. TBS_079 0.44 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.10 MPMX20_02257 putative amino-acid metabolite efflux pump low > 85
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.10 EX28DRAFT_1208 Predicted permease, DMT superfamily low > 76
Acinetobacter radioresistens SK82 0.36 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.09 MPMX26_00851 putative amino-acid metabolite efflux pump — —
Dechlorosoma suillum PS 0.36 Dsui_1027 RNA methyltransferase, RsmD family 0.16 Dsui_0488 EamA-like transporter family low > 51
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.10 BPHYT_RS23730 multidrug DMT transporter permease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 H281DRAFT_05943 Permease of the drug/metabolite transporter (DMT) superfamily low > 103
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.11 QEN71_RS21245 DMT family transporter low > 153
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS20695 methyltransferase 0.18 HSERO_RS08160 peptide ABC transporter ATP-binding protein low > 78
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.17 Ac3H11_2406 Permease of the drug/metabolite transporter (DMT) superfamily — —
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS01990 methyltransferase 0.14 RR42_RS07395 peptide ABC transporter ATP-binding protein low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.11 GFF3849 Permease of the drug/metabolite transporter (DMT) superfamily low > 90
Ralstonia solanacearum PSI07 0.28 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.16 RPSI07_RS15850 EamA/RhaT family transporter low > 81
Ralstonia solanacearum UW163 0.28 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.16 UW163_RS14945 EamA/RhaT family transporter — —
Bosea sp. OAE506 0.28 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.15 ABIE41_RS20065 DMT family transporter low > 77
Ralstonia solanacearum GMI1000 0.28 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.17 RS_RS08090 EamA/RhaT family transporter low > 80
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.16 RALBFv3_RS01635 EamA/RhaT family transporter low > 76
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.18 ABZR87_RS13435 DMT family transporter low > 80
Rhodospirillum rubrum S1H 0.24 Rru_A0653 hypothetical protein (NCBI) 0.15 Rru_A0136 Protein of unknown function DUF6, transmembrane (NCBI) — —
Agrobacterium fabrum C58 0.23 Atu0690 hypothetical protein 0.12 Atu2337 hypothetical protein low > 89
Rhizobium sp. OAE497 0.23 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.13 ABIE40_RS13925 DMT family transporter low > 107
Magnetospirillum magneticum AMB-1 0.23 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.17 AMB_RS12065 EamA/RhaT family transporter low > 64

Not shown: 40 genomes with orthologs for Psyr_4754 only; 6 genomes with orthologs for Psyr_1799 only