Conservation of cofitness between Pf1N1B4_1185 and Pf1N1B4_5619 in Pseudomonas fluorescens FW300-N1B4

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1185 Lactate-responsive regulator LldR in Enterobacteria, GntR family 1.0 Pf1N1B4_5619 BarA-associated response regulator UvrY (= GacA = SirA) 0.63 3
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_5113 Lactate-responsive regulator LldR in Enterobacteria, GntR family 1.00 PfGW456L13_2885 BarA-associated response regulator UvrY (= GacA = SirA) low > 87
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05695 transcriptional regulator PdhR 0.99 AO353_21830 chemotaxis protein CheY low > 101
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07545 transcriptional regulator PdhR 0.99 AO356_00355 chemotaxis protein CheY low > 104
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3379 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.99 Pf6N2E2_2022 BarA-associated response regulator UvrY (= GacA = SirA) low > 103
Pseudomonas fluorescens SBW25 0.94 PFLU_RS25940 FCD domain-containing protein 0.96 PFLU_RS10765 UvrY/SirA/GacA family response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS25940 FCD domain-containing protein 0.96 PFLU_RS10765 UvrY/SirA/GacA family response regulator transcription factor low > 109
Pseudomonas sp. RS175 0.93 PFR28_00064 Pyruvate dehydrogenase complex repressor 0.98 PFR28_01410 Response regulator GacA low > 88
Pseudomonas simiae WCS417 0.89 PS417_24100 transcriptional regulator PdhR 0.95 PS417_10720 chemotaxis protein CheY low > 88
Pseudomonas putida KT2440 0.86 PP_4734 DNA-binding transcriptional dual regulator, LldR-L-lactate 0.91 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.24 8
Pseudomonas sp. S08-1 0.79 OH686_17020 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.86 OH686_00335 BarA-associated response regulator UvrY ( GacA SirA) low > 80
Pseudomonas stutzeri RCH2 0.79 Psest_0956 Transcriptional regulators 0.88 Psest_2260 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 0.37 8
Marinobacter adhaerens HP15 0.64 HP15_4087 transcriptional regulator, GntR family 0.64 HP15_1567 two component transcriptional regulator, LuxR family low > 73
Enterobacter asburiae PDN3 0.43 EX28DRAFT_3708 Transcriptional regulators 0.58 EX28DRAFT_0633 two component transcriptional regulator, LuxR family low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_00806 Pyruvate dehydrogenase complex repressor 0.58 MPMX20_02839 Response regulator UvrY low > 85
Klebsiella michiganensis M5al 0.42 BWI76_RS04875 transcriptional regulator PdhR 0.56 BWI76_RS18335 DNA-binding response regulator low > 92
Escherichia coli Nissle 1917 0.42 ECOLIN_RS00635 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 ECOLIN_RS10900 UvrY/SirA/GacA family response regulator transcription factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03548 Pyruvate dehydrogenase complex repressor 0.58 OHPLBJKB_01815 Response regulator UvrY low > 73
Escherichia coli ECRC102 0.42 NIAGMN_08360 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 NIAGMN_02230 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR27 0.42 NOLOHH_02855 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 NOLOHH_16440 uvrY UvrY/SirA/GacA family response regulator transcription factor low > 75
Escherichia coli ECOR38 0.42 HEPCGN_08490 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 HEPCGN_04175 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC101 0.42 MCAODC_01025 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 MCAODC_19570 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli BL21 0.42 ECD_00112 pyruvate dehydrogenase complex repressor; autorepressor 0.53 ECD_01879 response regulator in two-component regulatory system with BarA low > 61
Escherichia coli ECRC98 0.42 JDDGAC_14105 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 JDDGAC_00410 uvrC excinuclease ABC subunit UvrC low > 86
Escherichia coli ECRC99 0.42 KEDOAH_17645 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 KEDOAH_02270 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC62 0.42 BNILDI_08755 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 BNILDI_15230 uvrY UvrY/SirA/GacA family response regulator transcription factor low > 75
Escherichia coli ECRC100 0.42 OKFHMN_10510 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 OKFHMN_25820 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia fergusonii Becca 0.42 EFB2_03932 Pyruvate dehydrogenase complex repressor 0.58 EFB2_02032 Response regulator UvrY low > 86
Escherichia coli BW25113 0.42 b0113 pdhR transcriptional regulator of pyruvate dehydrogenase complex (NCBI) 0.58 b1914 uvrY response regulator (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF123 Transcriptional repressor for pyruvate dehydrogenase complex 0.58 GFF1699 BarA-associated response regulator UvrY (= GacA = SirA) low > 78
Shewanella oneidensis MR-1 0.42 SO0423 pdhR pyruvate dehydrogenase complex repressor (NCBI ptt file) 0.61 SO1860 DNA-binding response regulator, LuxR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0425 pdhR transcriptional regulator PdhR (RefSeq) 0.61 Shewana3_1608 response regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.41 Sama_0374 pdhR transcriptional regulator PdhR (RefSeq) 0.59 Sama_1607 response regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_3432 pdhR transcriptional regulator PdhR (RefSeq) 0.59 Shew_1824 response regulator (RefSeq) — —
Serratia liquefaciens MT49 0.41 IAI46_21330 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.59 IAI46_09205 UvrY/SirA/GacA family response regulator transcription factor low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS17930 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 DDA3937_RS13705 UvrY/SirA/GacA family response regulator transcription factor low > 74
Dickeya dianthicola 67-19 0.40 HGI48_RS17855 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 HGI48_RS13800 UvrY/SirA/GacA family response regulator transcription factor low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS19005 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor low > 75
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_12225 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.65 CSW01_06135 two-component system response regulator UvrY — —
Erwinia tracheiphila SCR3 0.40 LU632_RS03075 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.60 LU632_RS10190 uvrY UvrY/SirA/GacA family response regulator transcription factor — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS03285 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 HER17_RS07710 UvrY/SirA/GacA family response regulator transcription factor low > 75
Rahnella sp. WP5 0.39 EX31_RS03485 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.60 EX31_RS24145 UvrY/SirA/GacA family response regulator transcription factor low > 89
Pantoea sp. MT58 0.39 IAI47_15815 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.58 IAI47_12470 UvrY/SirA/GacA family response regulator transcription factor low > 76
Alteromonas macleodii MIT1002 0.35 MIT1002_03004 Pyruvate dehydrogenase complex repressor 0.48 MIT1002_02154 Response regulator UvrY low > 70
Acinetobacter radioresistens SK82 0.30 MPMX26_02258 Putative L-lactate dehydrogenase operon regulatory protein 0.58 MPMX26_00164 Response regulator GacA 0.56 34

Not shown: 23 genomes with orthologs for Pf1N1B4_1185 only; 9 genomes with orthologs for Pf1N1B4_5619 only