Conservation of cofitness between Pf1N1B4_1185 and Pf1N1B4_3501 in Pseudomonas fluorescens FW300-N1B4

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1185 Lactate-responsive regulator LldR in Enterobacteria, GntR family 1.0 Pf1N1B4_3501 BarA sensory histidine kinase (= VarS = GacS) 0.52 11
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_5113 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.92 PfGW456L13_2029 BarA sensory histidine kinase (= VarS = GacS) low > 87
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05695 transcriptional regulator PdhR 0.91 AO353_02735 chemotaxis protein CheY low > 101
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07545 transcriptional regulator PdhR 0.91 AO356_19045 chemotaxis protein CheY low > 104
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3379 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.91 Pf6N2E2_5720 BarA sensory histidine kinase (= VarS = GacS) low > 103
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS25940 FCD domain-containing protein 0.85 PFLU_RS18410 response regulator low > 109
Pseudomonas fluorescens SBW25 0.94 PFLU_RS25940 FCD domain-containing protein 0.85 PFLU_RS18410 response regulator low > 109
Pseudomonas sp. RS175 0.93 PFR28_00064 Pyruvate dehydrogenase complex repressor 0.89 PFR28_03227 Signal transduction histidine-protein kinase BarA low > 88
Pseudomonas simiae WCS417 0.89 PS417_24100 transcriptional regulator PdhR 0.85 PS417_16370 chemotaxis protein CheY low > 88
Pseudomonas putida KT2440 0.86 PP_4734 DNA-binding transcriptional dual regulator, LldR-L-lactate 0.68 PP_1650 Sensor protein GacS 0.24 7
Pseudomonas sp. S08-1 0.79 OH686_17020 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.71 OH686_18945 Signal transduction histidine-protein kinase BarA low > 80
Pseudomonas stutzeri RCH2 0.79 Psest_0956 Transcriptional regulators 0.68 Psest_1635 Signal transduction histidine kinase 0.34 15
Marinobacter adhaerens HP15 0.64 HP15_4087 transcriptional regulator, GntR family 0.35 HP15_788 multi-sensor hybrid histidine kinase low > 73
Enterobacter asburiae PDN3 0.43 EX28DRAFT_3708 Transcriptional regulators 0.28 EX28DRAFT_2866 Uncharacterized domain of BarA-like signal transduction histidine kinases low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_00806 Pyruvate dehydrogenase complex repressor 0.28 MPMX20_03655 Signal transduction histidine-protein kinase BarA low > 85
Klebsiella michiganensis M5al 0.42 BWI76_RS04875 transcriptional regulator PdhR 0.27 BWI76_RS22815 hybrid sensor histidine kinase/response regulator low > 92
Escherichia coli ECRC98 0.42 JDDGAC_14105 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 JDDGAC_23905 barA two-component sensor histidine kinase BarA low > 86
Escherichia coli ECRC101 0.42 MCAODC_01025 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 MCAODC_10765 barA two-component sensor histidine kinase BarA low > 87
Escherichia coli BW25113 0.42 b0113 pdhR transcriptional regulator of pyruvate dehydrogenase complex (NCBI) 0.29 b2786 barA hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) low > 76
Escherichia coli Nissle 1917 0.42 ECOLIN_RS00635 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 ECOLIN_RS15525 two-component sensor histidine kinase BarA low > 55
Escherichia coli ECRC62 0.42 BNILDI_08755 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 BNILDI_10620 barA two-component sensor histidine kinase BarA low > 75
Escherichia coli ECRC99 0.42 KEDOAH_17645 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 KEDOAH_07890 barA two-component sensor histidine kinase BarA — —
Escherichia coli ECOR27 0.42 NOLOHH_02855 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 NOLOHH_12115 barA two-component sensor histidine kinase BarA low > 75
Escherichia coli ECRC102 0.42 NIAGMN_08360 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 NIAGMN_18010 barA two-component sensor histidine kinase BarA — —
Escherichia coli BL21 0.42 ECD_00112 pyruvate dehydrogenase complex repressor; autorepressor 0.29 ECD_02631 hybrid sensory histidine kinase, in two-component regulatory system with UvrY low > 61
Escherichia coli ECRC100 0.42 OKFHMN_10510 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 OKFHMN_20240 barA two-component sensor histidine kinase BarA low > 80
Escherichia fergusonii Becca 0.42 EFB2_03932 Pyruvate dehydrogenase complex repressor 0.29 EFB2_01131 Signal transduction histidine-protein kinase BarA low > 86
Escherichia coli ECOR38 0.42 HEPCGN_08490 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 HEPCGN_19490 barA two-component sensor histidine kinase BarA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03548 Pyruvate dehydrogenase complex repressor 0.29 OHPLBJKB_00945 Signal transduction histidine-protein kinase BarA low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF123 Transcriptional repressor for pyruvate dehydrogenase complex 0.28 GFF4839 BarA sensory histidine kinase (= VarS = GacS) low > 78
Shewanella oneidensis MR-1 0.42 SO0423 pdhR pyruvate dehydrogenase complex repressor (NCBI ptt file) 0.29 SO_3457 hybrid sensory histidine kinase BarA (RefSeq) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0425 pdhR transcriptional regulator PdhR (RefSeq) 0.29 Shewana3_1109 hybrid sensory histidine kinase BarA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.41 Sama_0374 pdhR transcriptional regulator PdhR (RefSeq) 0.28 Sama_1031 hybrid sensory histidine kinase BarA (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_3432 pdhR transcriptional regulator PdhR (RefSeq) 0.30 Shew_1200 hybrid sensory histidine kinase BarA (RefSeq) low > 60
Serratia liquefaciens MT49 0.41 IAI46_21330 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.28 IAI46_03590 two-component sensor histidine kinase BarA low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS17930 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 DDA3937_RS17025 two-component sensor histidine kinase BarA low > 74
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_12225 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.28 CSW01_12415 two-component sensor histidine kinase BarA low > 62
Dickeya dianthicola 67-19 0.40 HGI48_RS17855 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 HGI48_RS17080 two-component sensor histidine kinase BarA low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS19005 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.29 DZA65_RS18155 two-component sensor histidine kinase BarA low > 75
Pectobacterium carotovorum WPP14 0.40 HER17_RS03285 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.28 HER17_RS04105 two-component sensor histidine kinase BarA low > 75
Rahnella sp. WP5 0.39 EX31_RS03485 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.27 EX31_RS07965 two-component sensor histidine kinase BarA low > 89
Pantoea sp. MT58 0.39 IAI47_15815 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.27 IAI47_04110 two-component sensor histidine kinase BarA low > 76
Acinetobacter radioresistens SK82 0.30 MPMX26_02258 Putative L-lactate dehydrogenase operon regulatory protein 0.21 MPMX26_00535 Signal transduction histidine-protein kinase BarA 0.56 36

Not shown: 25 genomes with orthologs for Pf1N1B4_1185 only; 3 genomes with orthologs for Pf1N1B4_3501 only