Conservation of cofitness between Pf1N1B4_1185 and Pf1N1B4_2190 in Pseudomonas fluorescens FW300-N1B4

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_1185 Lactate-responsive regulator LldR in Enterobacteria, GntR family 1.0 Pf1N1B4_2190 Regulator of sigma D 0.68 1
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_5113 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.94 PfGW456L13_861 Regulator of sigma D low > 87
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05695 transcriptional regulator PdhR 0.95 AO353_08965 transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07545 transcriptional regulator PdhR 0.92 AO356_12810 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3379 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.93 Pf6N2E2_4435 Regulator of sigma D low > 103
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS25940 FCD domain-containing protein 0.84 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas fluorescens SBW25 0.94 PFLU_RS25940 FCD domain-containing protein 0.84 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas sp. RS175 0.93 PFR28_00064 Pyruvate dehydrogenase complex repressor 0.93 PFR28_04361 Regulator of sigma D low > 88
Pseudomonas simiae WCS417 0.89 PS417_24100 transcriptional regulator PdhR 0.85 PS417_27505 transcriptional regulator low > 88
Pseudomonas putida KT2440 0.86 PP_4734 DNA-binding transcriptional dual regulator, LldR-L-lactate 0.62 PP_0191 Transcriptional regulatory protein AlgQ low > 96
Pseudomonas sp. S08-1 0.79 OH686_17020 Lactate-responsive regulator LldR in Enterobacteria, GntR family 0.69 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD low > 80
Pseudomonas stutzeri RCH2 0.79 Psest_0956 Transcriptional regulators 0.64 Psest_3743 Regulator of sigma D low > 67
Marinobacter adhaerens HP15 0.64 HP15_4087 transcriptional regulator, GntR family 0.45 HP15_221 anti-RNA polymerase sigma 70 factor low > 73
Enterobacter asburiae PDN3 0.43 EX28DRAFT_3708 Transcriptional regulators 0.25 EX28DRAFT_4537 Regulator of sigma D low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_00806 Pyruvate dehydrogenase complex repressor 0.25 MPMX20_00218 Regulator of sigma D low > 85
Klebsiella michiganensis M5al 0.42 BWI76_RS04875 transcriptional regulator PdhR 0.32 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor low > 92
Escherichia coli ECRC98 0.42 JDDGAC_14105 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 JDDGAC_16995 rsd sigma D regulator low > 86
Escherichia coli Nissle 1917 0.42 ECOLIN_RS00635 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.24 ECOLIN_RS23045 sigma D regulator low > 55
Escherichia coli ECOR38 0.42 HEPCGN_08490 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 HEPCGN_12005 rsd sigma D regulator low > 87
Escherichia coli ECRC101 0.42 MCAODC_01025 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 MCAODC_03870 rsd sigma D regulator low > 87
Escherichia coli ECOR27 0.42 NOLOHH_02855 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 NOLOHH_05515 rsd sigma D regulator low > 75
Escherichia coli ECRC99 0.42 KEDOAH_17645 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 KEDOAH_14790 rsd sigma D regulator — —
Escherichia coli ECRC100 0.42 OKFHMN_10510 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 OKFHMN_13370 rsd sigma D regulator low > 80
Escherichia coli BW25113 0.42 b0113 pdhR transcriptional regulator of pyruvate dehydrogenase complex (NCBI) 0.25 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) low > 76
Escherichia coli BL21 0.42 ECD_00112 pyruvate dehydrogenase complex repressor; autorepressor 0.25 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit low > 61
Escherichia fergusonii Becca 0.42 EFB2_03932 Pyruvate dehydrogenase complex repressor 0.24 EFB2_04616 Regulator of sigma D low > 86
Escherichia coli ECRC102 0.42 NIAGMN_08360 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 NIAGMN_11120 rsd sigma D regulator — —
Escherichia coli ECRC62 0.42 BNILDI_08755 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.25 BNILDI_06010 rsd sigma D regulator low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03548 Pyruvate dehydrogenase complex repressor 0.25 OHPLBJKB_04055 Regulator of sigma D low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF123 Transcriptional repressor for pyruvate dehydrogenase complex 0.26 GFF4197 Regulator of sigma D low > 78
Shewanella sp. ANA-3 0.42 Shewana3_0425 pdhR transcriptional regulator PdhR (RefSeq) 0.31 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.42 SO0423 pdhR pyruvate dehydrogenase complex repressor (NCBI ptt file) 0.29 SO0433 rsd regulator of sigma D (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.41 Sama_0374 pdhR transcriptional regulator PdhR (RefSeq) 0.30 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_3432 pdhR transcriptional regulator PdhR (RefSeq) 0.32 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) low > 60
Serratia liquefaciens MT49 0.41 IAI46_21330 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.28 IAI46_01325 Rsd/AlgQ family anti-sigma factor low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS17930 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.19 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor low > 74
Dickeya dianthicola ME23 0.40 DZA65_RS19005 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.19 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor low > 75
Dickeya dianthicola 67-19 0.40 HGI48_RS17855 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.19 HGI48_RS01175 sigma D regulator low > 71
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_12225 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.24 CSW01_01710 Rsd/AlgQ family anti-sigma factor low > 62
Pectobacterium carotovorum WPP14 0.40 HER17_RS03285 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.24 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.57 13
Erwinia tracheiphila SCR3 0.40 LU632_RS03075 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR 0.21 LU632_RS00975 Rsd/AlgQ family anti-sigma factor low > 74
Rahnella sp. WP5 0.39 EX31_RS03485 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.26 EX31_RS16820 Rsd/AlgQ family anti-sigma factor low > 89
Pantoea sp. MT58 0.39 IAI47_15815 pyruvate dehydrogenase complex transcriptional repressor PdhR 0.26 IAI47_18080 Rsd/AlgQ family anti-sigma factor low > 76
Alteromonas macleodii MIT1002 0.35 MIT1002_03004 Pyruvate dehydrogenase complex repressor 0.29 MIT1002_03798 Regulator of sigma D low > 70

Not shown: 24 genomes with orthologs for Pf1N1B4_1185 only; 2 genomes with orthologs for Pf1N1B4_2190 only