Conservation of cofitness between PP_0872 and PP_5045 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0872 Peptide chain release factor 3 1.0 PP_5045 tRNA sulfurtransferase 0.40 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.82 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.82 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas simiae WCS417 0.95 PS417_04030 peptide chain release factor 3 0.82 PS417_01660 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05420 peptide chain release factor 3 0.84 AO353_12175 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_5060 Peptide chain release factor 3 0.83 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07285 peptide chain release factor 3 0.83 AO356_09700 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas sp. RS175 0.95 PFR28_00118 Peptide chain release factor RF3 0.82 PFR28_04950 tRNA sulfurtransferase — —
Pseudomonas fluorescens SBW25 0.95 PFLU_RS04070 peptide chain release factor 3 0.82 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS04070 peptide chain release factor 3 0.82 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas stutzeri RCH2 0.94 Psest_3351 peptide chain release factor 3 0.81 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI 0.31 11
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3327 Peptide chain release factor 3 0.83 Pf6N2E2_3819 Thiamine biosynthesis protein thiI — —
Pseudomonas sp. S08-1 0.92 OH686_08765 peptide chain release factor 3 0.76 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1130 Peptide chain release factor 3 0.85 Pf1N1B4_1604 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pantoea sp. MT58 0.69 IAI47_03375 peptide chain release factor 3 0.47 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI low > 76
Marinobacter adhaerens HP15 0.69 HP15_541 peptide chain release factor 3 0.45 HP15_3407 thiamine biosynthesis protein low > 73
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_03470 peptide chain release factor 3 0.43 CSW01_04585 tRNA 4-thiouridine(8) synthase ThiI low > 62
Shewanella loihica PV-4 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.49 Shew_2766 thiamine biosynthesis protein ThiI (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.69 LU632_RS02475 prfC peptide chain release factor 3 0.49 LU632_RS18845 thiI tRNA 4-thiouridine(8) synthase ThiI low > 74
Enterobacter sp. TBS_079 0.68 MPMX20_00673 Peptide chain release factor RF3 0.49 MPMX20_01014 tRNA sulfurtransferase low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS04100 peptide chain release factor 3 0.50 BWI76_RS06395 tRNA 4-thiouridine(8) synthase ThiI low > 92
Shewanella amazonensis SB2B 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) 0.48 Sama_2431 thiamine biosynthesis protein ThiI (RefSeq) — —
Shewanella sp. ANA-3 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.50 Shewana3_2896 thiamine biosynthesis protein ThiI (RefSeq) low > 73
Serratia liquefaciens MT49 0.68 IAI46_02875 peptide chain release factor 3 0.49 IAI46_04940 tRNA 4-thiouridine(8) synthase ThiI low > 86
Enterobacter asburiae PDN3 0.68 EX28DRAFT_3583 peptide chain release factor 3 0.49 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain low > 76
Dickeya dianthicola ME23 0.68 DZA65_RS02505 peptide chain release factor 3 0.50 DZA65_RS05930 tRNA 4-thiouridine(8) synthase ThiI low > 75
Rahnella sp. WP5 0.68 EX31_RS04095 peptide chain release factor 3 0.49 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF1035 Peptide chain release factor 3 0.50 GFF4327 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis low > 78
Dickeya dadantii 3937 0.68 DDA3937_RS02445 peptide chain release factor 3 0.50 DDA3937_RS05545 tRNA 4-thiouridine(8) synthase ThiI low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS02400 peptide chain release factor 3 0.49 HGI48_RS05605 tRNA 4-thiouridine(8) synthase ThiI — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS19065 peptide chain release factor 3 0.51 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI low > 75
Escherichia coli ECOR27 0.67 NOLOHH_03600 prfC peptide chain release factor 3 0.50 NOLOHH_01355 thiI tRNA sulfurtransferase low > 57
Escherichia coli Nissle 1917 0.67 ECOLIN_RS25110 peptide chain release factor 3 0.50 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 0.50 OHPLBJKB_03253 tRNA sulfurtransferase low > 73
Escherichia coli ECRC62 0.67 BNILDI_08000 prfC peptide chain release factor 3 0.50 BNILDI_22770 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC101 0.67 MCAODC_01795 prfC peptide chain release factor 3 0.51 MCAODC_27630 thiI tRNA sulfurtransferase — —
Escherichia fergusonii Becca 0.67 EFB2_04072 Peptide chain release factor RF3 0.51 EFB2_03634 tRNA sulfurtransferase low > 86
Escherichia coli BW25113 0.67 b4375 prfC peptide chain release factor 3 (NCBI) 0.50 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) low > 76
Escherichia coli ECRC102 0.67 NIAGMN_09130 prfC peptide chain release factor 3 0.51 NIAGMN_06460 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC101 0.67 OKFHMN_11280 prfC peptide chain release factor 3 0.51 OKFHMN_08405 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC98 0.67 JDDGAC_14875 prfC peptide chain release factor 3 0.51 JDDGAC_12060 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC99 0.67 KEDOAH_16865 prfC peptide chain release factor 3 0.51 KEDOAH_19560 thiI tRNA sulfurtransferase — —
Escherichia coli BL21 0.67 ECD_04250 peptide chain release factor RF-3 0.50 ECD_00371 tRNA s(4)U8 sulfurtransferase low > 60
Escherichia coli ECOR38 0.67 HEPCGN_09285 prfC peptide chain release factor 3 0.50 HEPCGN_07035 thiI tRNA sulfurtransferase 0.89 21

Not shown: 51 genomes with orthologs for PP_0872 only; 1 genomes with orthologs for PP_5045 only