Conservation of cofitness between PP_1476 and PP_4518 in Pseudomonas putida KT2440

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1476 conserved protein of unknown function 1.0 PP_4518 conserved protein of unknown function 0.16 11
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_3138 YaeQ protein 0.85 Pf6N2E2_2647 FIG039061: hypothetical protein related to heme utilization low > 103
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_04325 hypothetical protein 0.84 AO353_18420 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_1729 YaeQ protein 0.84 PfGW456L13_4425 FIG039061: hypothetical protein related to heme utilization low > 87
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_06350 hypothetical protein 0.82 AO356_04060 hypothetical protein low > 104
Pseudomonas sp. RS175 0.94 PFR28_00338 putative protein YaeQ 0.83 PFR28_00786 Inner membrane protein YbaN low > 88
Pseudomonas simiae WCS417 0.94 PS417_22860 hypothetical protein 0.82 PS417_19960 membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS24520 YaeQ family protein 0.84 PFLU_RS21930 DUF454 domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS24520 YaeQ family protein 0.84 PFLU_RS21930 DUF454 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_3019 YaeQ protein 0.87 Pf1N1B4_3531 FIG039061: hypothetical protein related to heme utilization — —
Pseudomonas sp. S08-1 0.76 OH686_06960 YaeQ protein 0.80 OH686_20660 Inner membrane protein YbaN low > 80
Pseudomonas stutzeri RCH2 0.75 Psest_1538 Uncharacterized protein conserved in bacteria 0.74 Psest_1866 Uncharacterized protein conserved in bacteria low > 67
Rhodanobacter denitrificans MT42 0.37 LRK55_RS15665 YaeQ family protein 0.31 LRK55_RS06000 YbaN family protein — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS15910 YaeQ family protein 0.31 LRK54_RS06255 YbaN family protein low > 59
Serratia liquefaciens MT49 0.33 IAI46_20115 YaeQ family protein 0.29 IAI46_05220 DUF454 family protein low > 86
Dickeya dadantii 3937 0.33 DDA3937_RS05220 YaeQ family protein 0.28 DDA3937_RS05770 DUF454 family protein low > 74
Dickeya dianthicola ME23 0.33 DZA65_RS05560 YaeQ family protein 0.26 DZA65_RS06145 DUF454 family protein low > 75
Dickeya dianthicola 67-19 0.33 HGI48_RS05220 YaeQ family protein 0.28 HGI48_RS05820 DUF454 family protein — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12205 YaeQ family protein 0.39 ABCV34_RS06460 YbaN family protein low > 48
Rahnella sp. WP5 0.33 EX31_RS12920 YaeQ family protein 0.31 EX31_RS22500 DUF454 family protein low > 89
Pectobacterium carotovorum WPP14 0.33 HER17_RS16230 YaeQ family protein 0.28 HER17_RS15715 DUF454 family protein low > 75
Shewanella loihica PV-4 0.32 Shew_2331 YaeQ family protein (RefSeq) 0.27 Shew_2237 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.32 SO3107 conserved hypothetical protein (NCBI ptt file) 0.31 SO2011 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.32 Shewana3_1442 YaeQ family protein (RefSeq) 0.24 Shewana3_2448 hypothetical protein (RefSeq) — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS01035 YaeQ family protein 0.39 ECOLIN_RS02785 DUF454 family protein — —
Escherichia coli ECOR38 0.29 HEPCGN_08055 yaeQ Uncharacterized protein YaeQ 0.39 HEPCGN_06790 ybaN DUF454 domain-containing protein low > 85
Escherichia fergusonii Becca 0.29 EFB2_03853 putative protein YaeQ 0.39 EFB2_03590 Inner membrane protein YbaN low > 86
Escherichia coli ECRC98 0.29 JDDGAC_13695 yaeQ Uncharacterized protein YaeQ 0.39 JDDGAC_11825 ybaN DUF454 domain-containing protein — —
Escherichia coli ECRC101 0.29 OKFHMN_10100 yaeQ Uncharacterized protein YaeQ 0.39 OKFHMN_08175 ybaN DUF454 domain-containing protein — —
Escherichia coli ECRC99 0.29 KEDOAH_18055 yaeQ Uncharacterized protein YaeQ 0.39 KEDOAH_19790 ybaN DUF454 domain-containing protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF30 YaeQ protein 0.39 GFF4386 FIG039061: hypothetical protein related to heme utilization low > 78
Escherichia coli ECRC101 0.29 MCAODC_00615 yaeQ Uncharacterized protein YaeQ 0.37 MCAODC_27400 ybaN DUF454 domain-containing protein — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_3779 Uncharacterized protein conserved in bacteria 0.40 EX28DRAFT_2490 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.29 MPMX20_00875 putative protein YaeQ 0.39 MPMX20_01070 Inner membrane protein YbaN low > 85
Escherichia coli BL21 0.29 ECD_00189 PDDEXK superfamily protein 0.39 ECD_00419 DUF454 family inner membrane protein low > 60
Escherichia coli BW25113 0.29 b0190 yaeQ hypothetical protein (NCBI) 0.39 b0468 ybaN conserved inner membrane protein (NCBI) 0.31 23
Escherichia coli ECRC62 0.28 BNILDI_09225 yaeQ Uncharacterized protein YaeQ 0.39 BNILDI_22525 ybaN DUF454 domain-containing protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03472 putative protein YaeQ 0.39 OHPLBJKB_03206 Inner membrane protein YbaN low > 73
Escherichia coli ECOR27 0.28 NOLOHH_02445 yaeQ Uncharacterized protein YaeQ 0.39 NOLOHH_01105 ybaN DUF454 domain-containing protein low > 57
Klebsiella michiganensis M5al 0.28 BWI76_RS05325 hypothetical protein 0.40 BWI76_RS06810 hypothetical protein low > 92
Shewanella amazonensis SB2B 0.27 Sama_2186 hypothetical protein (RefSeq) 0.34 Sama_1308 hypothetical protein (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF618 YaeQ protein 0.37 GFF2586 FIG039061: hypothetical protein related to heme utilization low > 90
Escherichia coli ECRC102 0.25 NIAGMN_07950 yaeQ Uncharacterized protein YaeQ 0.39 NIAGMN_06230 ybaN DUF454 domain-containing protein — —

Not shown: 23 genomes with orthologs for PP_1476 only; 12 genomes with orthologs for PP_4518 only