| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_5127 | | ribosomal RNA large subunit methyltransferase I | 1.0 | PP_2455 | | ribose ABC transporter - ATP-binding subunit | 0.18 | 8 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_13260 | | SAM-dependent methyltransferase | 0.76 | AO356_00965 | | sugar ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_4566 | | LSU m5C1962 methyltransferase RlmI | 0.76 | Pf6N2E2_162 | | Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) | low | > 103 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_04274 | | Ribosomal RNA large subunit methyltransferase I | 0.76 | PFR28_02736 | | Arabinose import ATP-binding protein AraG | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.92 | AO353_08330 | | SAM-dependent methyltransferase | 0.77 | AO353_20820 | | sugar ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_2307 | | LSU m5C1962 methyltransferase RlmI | 0.75 | Pf1N1B4_6034 | | D-ribose ABC transporter, ATPase component RbsA (from data) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_977 | | LSU m5C1962 methyltransferase RlmI | 0.76 | PfGW456L13_3911 | | Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_26880 | | SAM-dependent methyltransferase | 0.76 | PS417_18400 | | D-ribose ABC transporter, ATPase component RbsA (from data) | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.92 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.77 | PFLU_RS20375 | | sugar ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.92 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.77 | PFLU_RS20375 | | sugar ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.92 | Psyr_4764 | | SAM-dependent methyltransferase | 0.76 | Psyr_2152 | | monosaccharide ABC transporter ATP-binding protein, CUT2 family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.92 | Psyr_4764 | | SAM-dependent methyltransferase | 0.76 | Psyr_2152 | | monosaccharide ABC transporter ATP-binding protein, CUT2 family | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_0236 | | Predicted SAM-dependent methyltransferases | 0.24 | Psest_1392 | | ABC-type uncharacterized transport systems, ATPase components | low | > 67 |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_00203 | | Ribosomal RNA large subunit methyltransferase I | 0.36 | MPMX19_03312 | | Galactose/methyl galactoside import ATP-binding protein MglA | low | > 112 |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_06820 | | ribosomal RNA large subunit methyltransferase I | 0.32 | CSW01_06695 | | galactose/methyl galactoside import ATP-binding protein MglA | low | > 62 |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_1976 | | Predicted SAM-dependent methyltransferases | 0.34 | EX28DRAFT_0653 | | ABC-type sugar transport system, ATPase component | low | > 76 |
| Escherichia coli ECOR38 | 0.27 | HEPCGN_23335 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.34 | HEPCGN_16545 | xylG | D-xylose ABC transporter ATP-binding protein | low | > 85 |
| Escherichia coli BW25113 | 0.27 | b0967 | yccW | predicted methyltransferase (RefSeq) | 0.33 | b4087 | alsA | fused D-allose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.27 | MPMX20_01617 | | Ribosomal RNA large subunit methyltransferase I | 0.34 | MPMX20_02807 | | Arabinose import ATP-binding protein AraG | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.27 | OHPLBJKB_02699 | | Ribosomal RNA large subunit methyltransferase I | 0.33 | OHPLBJKB_01829 | | Arabinose import ATP-binding protein AraG | low | > 73 |
| Escherichia coli ECRC102 | 0.27 | NIAGMN_02905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | NIAGMN_01990 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Escherichia coli Nissle 1917 | 0.27 | ECOLIN_RS05085 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.34 | ECOLIN_RS18685 | | sugar ABC transporter ATP-binding protein | — | — |
| Escherichia coli ECRC99 | 0.27 | KEDOAH_22550 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | KEDOAH_02030 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Escherichia fergusonii Becca | 0.27 | EFB2_03104 | | Ribosomal RNA large subunit methyltransferase I | 0.34 | EFB2_00572 | | Ribose import ATP-binding protein RbsA | low | > 86 |
| Escherichia coli ECOR27 | 0.27 | NOLOHH_21740 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | NOLOHH_04980 | alsA | D-allose ABC transporter ATP-binding protein AlsA | — | — |
| Escherichia coli ECRC62 | 0.27 | BNILDI_19905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | BNILDI_15305 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Escherichia coli ECRC98 | 0.27 | JDDGAC_08795 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | JDDGAC_00650 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Escherichia coli ECRC101 | 0.27 | MCAODC_24575 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | MCAODC_19330 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Escherichia coli ECRC101 | 0.27 | OKFHMN_05185 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | OKFHMN_26075 | araG | arabinose ABC transporter ATP-binding protein AraG | — | — |
| Rahnella sp. WP5 | 0.26 | EX31_RS17990 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.33 | EX31_RS06650 | | L-arabinose ABC transporter ATP-binding protein AraG | low | > 89 |
| Burkholderia phytofirmans PsJN | 0.26 | BPHYT_RS01650 | | 23S rRNA methyltransferase | 0.71 | BPHYT_RS11215 | | ribose ABC transporter ATPase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.26 | QEN71_RS00350 | | class I SAM-dependent rRNA methyltransferase | 0.68 | QEN71_RS07345 | | sugar ABC transporter ATP-binding protein | low | > 153 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.26 | ABZR88_RS22040 | | class I SAM-dependent rRNA methyltransferase | 0.33 | ABZR88_RS15225 | | sugar ABC transporter ATP-binding protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_02203 | | SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase | 0.71 | H281DRAFT_05226 | | monosaccharide ABC transporter ATP-binding protein, CUT2 family | 0.30 | 88 |
| Paraburkholderia graminis OAS925 | 0.25 | ABIE53_000425 | | 23S rRNA (cytosine1962-C5)-methyltransferase | 0.69 | ABIE53_002324 | | ribose transport system ATP-binding protein | low | > 113 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS05070 | | class I SAM-dependent rRNA methyltransferase | 0.56 | ABZR87_RS09965 | | sugar ABC transporter ATP-binding protein | 0.32 | 52 |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS09670 | | class I SAM-dependent rRNA methyltransferase | 0.55 | RALBFv3_RS14250 | | sugar ABC transporter ATP-binding protein | low | > 76 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS03910 | | class I SAM-dependent rRNA methyltransferase | 0.55 | UW163_RS11715 | | sugar ABC transporter ATP-binding protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS00255 | | class I SAM-dependent rRNA methyltransferase | 0.56 | RS_RS05030 | | sugar ABC transporter ATP-binding protein | 0.39 | 48 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS23695 | | class I SAM-dependent rRNA methyltransferase | 0.55 | RPSI07_RS19215 | | sugar ABC transporter ATP-binding protein | low | > 81 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.23 | Echvi_3350 | | Predicted SAM-dependent methyltransferases | 0.33 | Echvi_1282 | | ABC-type sugar transport system, ATPase component | low | > 79 |
| Variovorax sp. SCN45 | 0.21 | GFF4489 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) | 0.54 | GFF2139 | | Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) | low | > 127 |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS06155 | | class I SAM-dependent methyltransferase | 0.53 | ABID97_RS24760 | | sugar ABC transporter ATP-binding protein | low | > 91 |
Not shown: 39 genomes with orthologs for PP_5127 only; 12 genomes with orthologs for PP_2455 only