Conservation of cofitness between PP_5348 and PP_2168 in Pseudomonas putida KT2440

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5348 Transcriptional regulator, LysR family 1.0 PP_2168 Transaldolase 0.57 12
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_10035 LysR family transcriptional regulator 0.78 AO353_00310 transaldolase 0.71 31
Pseudomonas sp. RS175 0.86 PFR28_04519 HTH-type transcriptional activator CmpR 0.75 PFR28_01142 Transaldolase 0.23 60
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12015 LysR family transcriptional regulator 0.75 AO356_02175 transaldolase 0.61 38
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.75 Pf1N1B4_58 Transaldolase (EC 2.2.1.2) 0.71 35
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.80 PFLU_RS18200 transaldolase low > 109
Pseudomonas fluorescens SBW25 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.80 PFLU_RS18200 transaldolase low > 109
Pseudomonas simiae WCS417 0.84 PS417_28220 LysR family transcriptional regulator 0.78 PS417_07730 transaldolase — —
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.75 PfGW456L13_4009 Transaldolase (EC 2.2.1.2) 0.51 76
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.75 Pf6N2E2_2258 Transaldolase (EC 2.2.1.2) 0.53 45
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_5062 transcriptional regulator, LysR family 0.73 Psyr_1914 transaldolase low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_5062 transcriptional regulator, LysR family 0.73 Psyr_1914 transaldolase 0.62 6
Pseudomonas stutzeri RCH2 0.74 Psest_4086 Transcriptional regulator 0.75 Psest_2708 transaldolase low > 67
Pseudomonas sp. S08-1 0.71 OH686_13195 Transcriptional regulator, LysR family 0.76 OH686_22740 transaldolase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_03013 transcriptional regulator, LysR family 0.53 H281DRAFT_00286 transaldolase low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_005077 DNA-binding transcriptional LysR family regulator 0.54 ABIE53_001416 transaldolase low > 113
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS29890 LysR family transcriptional regulator 0.54 BPHYT_RS06045 transaldolase low > 109
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS20425 LysR family transcriptional regulator 0.54 QEN71_RS24595 transaldolase low > 153
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS31340 transcriptional regulator 0.53 RR42_RS13050 transaldolase low > 128
Shewanella loihica PV-4 0.33 Shew_1245 LysR family transcriptional regulator (RefSeq) 0.60 Shew_1089 transaldolase B (RefSeq) — —
Rhodospirillum rubrum S1H 0.33 Rru_A2401 RuBisCO transcriptional regulator cbbR, LysR family (NCBI) 0.51 Rru_A1357 Transaldolase AB (NCBI) low > 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2192 Cys regulon transcriptional activator CysB 0.55 GFF1363 Transaldolase (EC 2.2.1.2) low > 90
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3174 RuBisCO operon transcriptional regulator 0.57 Ac3H11_2059 Transaldolase (EC 2.2.1.2) low > 79
Variovorax sp. OAS795 0.31 ABID97_RS24450 LysR family transcriptional regulator 0.53 ABID97_RS07095 transaldolase low > 91
Shewanella amazonensis SB2B 0.24 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) 0.61 Sama_0913 transaldolase B (RefSeq) — —
Shewanella oneidensis MR-1 0.23 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) 0.61 SO3546 tal transaldolase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) 0.61 Shewana3_3147 transaldolase B (RefSeq) — —

Not shown: 5 genomes with orthologs for PP_5348 only; 43 genomes with orthologs for PP_2168 only