Conservation of cofitness between PP_5346 and PP_1988 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5346 pyruvate carboxylase subunit B 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.60 14
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_729 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 22
Pseudomonas sp. RS175 0.97 PFR28_04517 Oxaloacetate decarboxylase alpha chain 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.33 12
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_12025 pyruvate carboxylase subunit B 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.68 26
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_4279 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.71 16
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_10025 pyruvate carboxylase subunit B 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.79 5
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2011 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.77 23
Pseudomonas simiae WCS417 0.95 PS417_28210 pyruvate carboxylase subunit B 0.93 PS417_18585 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS29875 oxaloacetate decarboxylase subunit alpha 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS29875 oxaloacetate decarboxylase subunit alpha 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_5060 Oxaloacetate decarboxylase, alpha subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_5060 Oxaloacetate decarboxylase, alpha subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.42 58
Pseudomonas sp. S08-1 0.88 OH686_13205 oxaloacetate decarboxylase alpha subunit 0.87 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_4084 oxaloacetate decarboxylase alpha subunit 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.66 10
Marinobacter adhaerens HP15 0.65 HP15_3935 pyruvate carboxylase subunit B 0.73 HP15_1832 3-isopropylmalate dehydrogenase low > 73
Shewanella amazonensis SB2B 0.48 Sama_1052 oxaloacetate decarboxylase (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_04100 oxaloacetate decarboxylase subunit alpha 0.53 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Shewanella loihica PV-4 0.47 Shew_1220 pyruvate carboxylase subunit B (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.63 45
Alteromonas macleodii MIT1002 0.46 MIT1002_01135 Methylmalonyl-CoA carboxyltransferase 5S subunit 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF225 Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Klebsiella michiganensis M5al 0.46 BWI76_RS04420 oxaloacetate decarboxylase 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase low > 92
Shewanella sp. ANA-3 0.45 Shewana3_3165 oxaloacetate decarboxylase (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) low > 73
Methanococcus maripaludis S2 0.45 MMP_RS01820 sodium-extruding oxaloacetate decarboxylase subunit alpha 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase — —
Methanococcus maripaludis JJ 0.45 MMJJ_RS03560 sodium-extruding oxaloacetate decarboxylase subunit alpha 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase — —
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS10030 oxaloacetate decarboxylase 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase low > 72
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS14410 oxaloacetate decarboxylase 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS05570 pyruvate carboxylase subunit B 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase low > 56
Bacteroides ovatus ATCC 8483 0.14 BACOVA_04453 Biotin-requiring enzyme 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.14 BT1697 pyruvate carboxylase subunit B (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 81

Not shown: 0 genomes with orthologs for PP_5346 only; 74 genomes with orthologs for PP_1988 only