Conservation of cofitness between PP_1742 and PP_1655 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1742 conserved inner membrane protein of unknown function 1.0 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 9
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_01870 hypothetical protein 0.69 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3672 small component of pyruvate transporter (yjcH-like) (from data) 0.72 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3757 Protein of unknown function DUF485 0.71 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3757 Protein of unknown function DUF485 0.71 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas sp. RS175 0.90 PFR28_03103 Inner membrane protein YjcH 0.72 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_19660 hypothetical protein 0.72 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_5848 small component of pyruvate transporter (yjcH-like) (from data) 0.72 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Pseudomonas fluorescens SBW25 0.89 PFLU_RS08920 DUF485 domain-containing protein 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas simiae WCS417 0.89 PS417_08860 small component of pyruvate transporter (yjcH-like) (from data) 0.72 PS417_20155 23S rRNA methyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS08920 DUF485 domain-containing protein 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_4276 Putative membrane protein, clustering with ActP 0.69 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas sp. S08-1 0.73 OH686_19835 Inner membrane protein YjcH, clustering with ActP 0.72 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Pseudomonas stutzeri RCH2 0.67 Psest_2939 Predicted membrane protein 0.69 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Serratia liquefaciens MT49 0.62 IAI46_01400 DUF485 domain-containing protein 0.37 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Pectobacterium carotovorum WPP14 0.60 HER17_RS17635 DUF485 domain-containing protein 0.35 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Rahnella sp. WP5 0.60 EX31_RS09045 DUF485 domain-containing protein 0.34 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Escherichia coli BW25113 0.60 b4068 yjcH required for glycolate transport, with actP (from data) 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.60 NOLOHH_05090 yjcH Inner membrane protein YjcH 0.34 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 57
Escherichia coli ECRC98 0.60 JDDGAC_16475 yjcH DUF485 domain-containing protein 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC101 0.60 MCAODC_03350 yjcH DUF485 domain-containing protein 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC102 0.60 NIAGMN_10685 yjcH DUF485 domain-containing protein 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC62 0.60 BNILDI_06435 yjcH Inner membrane protein YjcH 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS23545 DUF485 domain-containing protein 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_03972 Inner membrane protein YjcH 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Escherichia coli ECRC101 0.60 OKFHMN_12840 yjcH DUF485 domain-containing protein 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli BL21 0.60 ECD_03940 DUF485 family inner membrane protein 0.34 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC99 0.60 KEDOAH_15310 yjcH DUF485 domain-containing protein 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia fergusonii Becca 0.59 EFB2_04521 Inner membrane protein YjcH 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Dickeya dadantii 3937 0.59 DDA3937_RS03475 DUF485 domain-containing protein 0.34 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Dickeya dianthicola ME23 0.59 DZA65_RS03690 DUF485 domain-containing protein 0.33 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS03575 DUF485 domain-containing protein 0.32 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF1451 Putative membrane protein, clustering with ActP 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Escherichia coli ECOR38 0.58 HEPCGN_11460 yjcH Inner membrane protein YjcH 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Azospirillum sp. SherDot2 0.54 MPMX19_02433 Inner membrane protein YjcH 0.14 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 112
Pantoea sp. MT58 0.53 IAI47_17720 DUF485 domain-containing protein 0.36 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Magnetospirillum magneticum AMB-1 0.52 AMB_RS07810 DUF485 domain-containing protein 0.16 AMB_RS01660 class I SAM-dependent RNA methyltransferase — —
Rhodospirillum rubrum S1H 0.52 Rru_A0636 Protein of unknown function DUF485 (NCBI) 0.14 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) — —
Azospirillum brasilense Sp245 0.50 AZOBR_RS02935 small component of pyruvate transporter (yjcH-like) (from data) 0.14 AZOBR_RS01195 RNA methyltransferase low > 97
Enterobacter asburiae PDN3 0.48 EX28DRAFT_4233 Predicted membrane protein 0.35 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_00290 Inner membrane protein YjcH 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Klebsiella michiganensis M5al 0.47 BWI76_RS02090 membrane protein 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase low > 92
Castellaniella sp019104865 MT123 0.44 ABCV34_RS15775 DUF485 domain-containing protein 0.33 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 48
Dechlorosoma suillum PS 0.44 Dsui_0523 putative membrane protein 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA low > 51
Acinetobacter radioresistens SK82 0.44 MPMX26_02899 Inner membrane protein YjcH 0.38 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF3917 Putative membrane protein, clustering with ActP 0.29 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 90
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.5154.1 Putative membrane protein, clustering with ActP 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 74
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS30455 DUF485 domain-containing protein 0.33 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 153

Not shown: 0 genomes with orthologs for PP_1742 only; 51 genomes with orthologs for PP_1655 only