Conservation of cofitness between PP_4162 and PP_1302 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4162 conserved membrane protein of unknown function 1.0 PP_1302 putative metal-binding hydrolase-oxidase enzyme 0.40 1
Pseudomonas fluorescens SBW25 0.81 PFLU_RS09095 AI-2E family transporter 0.90 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS09095 AI-2E family transporter 0.90 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_19830 hypothetical protein 0.90 AO356_16660 metal-binding protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5882 Putative membrane protein 0.90 Pf6N2E2_5256 FIG137478: Hypothetical protein YbgI low > 103
Pseudomonas sp. RS175 0.80 PFR28_03068 Putative transport protein YdiK 0.90 PFR28_00192 GTP cyclohydrolase 1 type 2 low > 88
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_2055 Putative membrane protein 0.88 PfGW456L13_4997 FIG137478: Hypothetical protein YbgI low > 87
Pseudomonas simiae WCS417 0.79 PS417_09040 hypothetical protein 0.90 PS417_03710 metal-binding protein low > 88
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2029 Protein of unknown function UPF0118 0.88 Psyr_4129 Protein of unknown function DUF34 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2029 Protein of unknown function UPF0118 0.88 Psyr_4129 Protein of unknown function DUF34 low > 86
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_01690 hypothetical protein 0.89 AO353_05085 metal-binding protein low > 101
Pseudomonas sp. S08-1 0.68 OH686_01920 Uncharacterized UPF0118 membrane protein 0.89 OH686_08455 GTP cyclohydrolase 1 type 2-related YbgI low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_2464 Predicted permease 0.75 Psest_3295 dinuclear metal center protein, YbgI/SA1388 family low > 67
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS03900 membrane protein 0.50 RR42_RS18835 Nif3-like dinuclear metal center hexameric protein low > 128
Paraburkholderia graminis OAS925 0.40 ABIE53_001629 putative PurR-regulated permease PerM 0.50 ABIE53_003686 dinuclear metal center YbgI/SA1388 family protein low > 113
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06810 membrane protein 0.51 BPHYT_RS17635 metal-binding protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04605 Predicted PurR-regulated permease PerM 0.50 H281DRAFT_05668 dinuclear metal center protein, YbgI/SA1388 family low > 103
Dechlorosoma suillum PS 0.38 Dsui_0423 putative permease 0.48 Dsui_1427 dinuclear metal center protein, YbgI/SA1388 family low > 51
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS23970 AI-2E family transporter 0.51 QEN71_RS27790 Nif3-like dinuclear metal center hexameric protein low > 153
Rahnella sp. WP5 0.30 EX31_RS13930 AI-2E family transporter YdiK 0.48 EX31_RS23375 type 2 GTP cyclohydrolase I low > 89
Pectobacterium carotovorum WPP14 0.29 HER17_RS08900 AI-2E family transporter YdiK 0.53 HER17_RS14990 type 2 GTP cyclohydrolase I low > 75
Serratia liquefaciens MT49 0.29 IAI46_11125 AI-2E family transporter YdiK 0.53 IAI46_06210 type 2 GTP cyclohydrolase I low > 86
Escherichia coli ECRC102 0.29 NIAGMN_00840 ydiK AI-2E family transporter YdiK 0.51 NIAGMN_05065 ybgI radiation resistance protein YbgI — —
Escherichia fergusonii Becca 0.29 EFB2_02304 Putative transport protein YdiK 0.51 EFB2_03393 GTP cyclohydrolase 1 type 2 low > 86
Escherichia coli ECRC101 0.29 OKFHMN_27225 ydiK AI-2E family transporter YdiK 0.51 OKFHMN_07010 ybgI radiation resistance protein YbgI — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS09435 AI-2E family transporter YdiK 0.51 ECOLIN_RS03800 radiation resistance protein YbgI — —
Klebsiella michiganensis M5al 0.29 BWI76_RS17055 hypothetical protein 0.51 BWI76_RS08345 Nif3-like dinuclear metal center protein low > 92
Escherichia coli ECRC62 0.29 BNILDI_16535 ydiK AI-2E family transporter YdiK 0.51 BNILDI_21390 ybgI radiation resistance protein YbgI — —
Escherichia coli ECRC98 0.29 JDDGAC_01800 ydiK AI-2E family transporter YdiK 0.51 JDDGAC_10665 ybgI radiation resistance protein YbgI — —
Escherichia coli ECRC99 0.29 KEDOAH_00885 ydiK AI-2E family transporter YdiK 0.51 KEDOAH_20955 ybgI radiation resistance protein YbgI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02036 Putative transport protein YdiK 0.51 OHPLBJKB_03007 GTP cyclohydrolase 1 type 2 low > 73
Escherichia coli ECOR27 0.29 NOLOHH_17745 ydiK AI-2E family transporter YdiK 0.51 NOLOHH_23395 ybgI radiation resistance protein YbgI — —
Escherichia coli ECRC101 0.29 MCAODC_18185 ydiK AI-2E family transporter YdiK 0.51 MCAODC_26230 ybgI radiation resistance protein YbgI — —
Escherichia coli BL21 0.29 ECD_01657 UPF0118 family inner membrane protein 0.51 ECD_00670 NIF3 family metal-binding protein low > 60
Escherichia coli ECOR38 0.29 HEPCGN_05610 ydiK AI-2E family transporter YdiK 0.51 HEPCGN_01200 ybgI radiation resistance protein YbgI low > 85
Escherichia coli BW25113 0.29 b1688 ydiK predicted inner membrane protein (NCBI) 0.51 b0710 ybgI conserved metal-binding protein (NCBI) low > 76
Enterobacter asburiae PDN3 0.28 EX28DRAFT_1697 Predicted permease 0.51 EX28DRAFT_2277 dinuclear metal center protein, YbgI/SA1388 family low > 76
Dickeya dadantii 3937 0.28 DDA3937_RS12800 AI-2E family transporter YdiK 0.50 DDA3937_RS06410 type 2 GTP cyclohydrolase I low > 74
Enterobacter sp. TBS_079 0.28 MPMX20_01925 Putative transport protein YdiK 0.51 MPMX20_01344 GTP cyclohydrolase 1 type 2 low > 85
Dickeya dianthicola ME23 0.28 DZA65_RS13330 AI-2E family transporter YdiK 0.46 DZA65_RS06800 type 2 GTP cyclohydrolase I low > 75
Dickeya dianthicola 67-19 0.28 HGI48_RS12865 AI-2E family transporter YdiK 0.46 HGI48_RS06455 type 2 GTP cyclohydrolase I low > 71
Acinetobacter radioresistens SK82 0.28 MPMX26_02768 Putative transport protein YdiK 0.45 MPMX26_00997 GTP cyclohydrolase 1 type 2 low > 36
Erwinia tracheiphila SCR3 0.27 LU632_RS11035 ydiK AI-2E family transporter YdiK 0.51 LU632_RS16150 type 2 GTP cyclohydrolase I low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3553 Putative membrane protein 0.52 GFF4615 FIG137478: Hypothetical protein YbgI low > 78
Pantoea sp. MT58 0.26 IAI47_10895 AI-2E family transporter YdiK 0.53 IAI47_13810 type 2 GTP cyclohydrolase I low > 76
Shewanella oneidensis MR-1 0.19 SO0472 membrane protein, putative (NCBI ptt file) 0.49 SO2621 conserved hypothetical protein TIGR00486 (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF3026 putative membrane protein 0.44 GFF1298 FIG137478: Hypothetical protein YbgI low > 90

Not shown: 4 genomes with orthologs for PP_4162 only; 16 genomes with orthologs for PP_1302 only