| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_5145 | | phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) | 1.0 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | 0.39 | 14 |
| Pseudomonas fluorescens FW300-N1B4 | 0.94 | Pf1N1B4_2284 | | FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated | 0.68 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_953 | | FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated | 0.68 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_10350 | | phosphoenolpyruvate-protein phosphotransferase | 0.70 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.93 | PFR28_04830 | | Phosphoenolpyruvate-dependent phosphotransferase system | 0.71 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_3942 | | FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated | 0.70 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_08465 | | phosphoenolpyruvate-protein phosphotransferase | 0.70 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.93 | Psyr_4842 | | Phosphoenolpyruvate-protein phosphotransferase | 0.67 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.93 | Psyr_4842 | | Phosphoenolpyruvate-protein phosphotransferase | 0.67 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.92 | PFLU_RS28645 | | phosphoenolpyruvate--protein phosphotransferase | 0.67 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.84 | 5 |
| Pseudomonas fluorescens SBW25-INTG | 0.92 | PFLU_RS28645 | | phosphoenolpyruvate--protein phosphotransferase | 0.67 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_26985 | | phosphoenolpyruvate-protein phosphotransferase | 0.66 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 88 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_11430 | | Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated | 0.67 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_3862 | | phosphoenolpyruvate-protein phosphotransferase | 0.65 | Psest_0725 | | Negative regulator of beta-lactamase expression | low | > 67 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_00341 | | Phosphoenolpyruvate-dependent phosphotransferase system | 0.49 | MPMX26_00043 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00648 | | Phosphoenolpyruvate-protein phosphotransferase | 0.53 | MIT1002_03006 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 70 |
| Shewanella amazonensis SB2B | 0.41 | Sama_0864 | | phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) | 0.53 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.41 | Shew_1039 | | phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) | 0.49 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_03525 | | phosphoenolpyruvate-protein phosphotransferase PtsP | 0.49 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 62 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3042 | | phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) | 0.50 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.40 | SO1332 | ptsP | phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) | 0.49 | SO0421 | ampD | AmpD protein (NCBI ptt file) | low | > 76 |
| Rahnella sp. WP5 | 0.40 | EX31_RS13200 | | phosphoenolpyruvate--protein phosphotransferase | 0.48 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 89 |
| Serratia liquefaciens MT49 | 0.39 | IAI46_20450 | | phosphoenolpyruvate--protein phosphotransferase | 0.46 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia fergusonii Becca | 0.39 | EFB2_01055 | | Phosphoenolpyruvate-dependent phosphotransferase system | 0.50 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS15875 | | phosphoenolpyruvate--protein phosphotransferase | 0.50 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.76 | 34 |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_23670 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_08125 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC101 | 0.39 | MCAODC_10530 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC101 | 0.39 | OKFHMN_20005 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_00901 | | Phosphoenolpyruvate-dependent phosphotransferase system | 0.50 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 73 |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_17775 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_11890 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 57 |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_19260 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_10370 | ptsP | phosphoenolpyruvate--protein phosphotransferase | 0.50 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS23270 | | phosphoenolpyruvate--protein phosphotransferase PtsP | 0.51 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Escherichia coli BL21 | 0.39 | ECD_02677 | | PEP-protein phosphotransferase enzyme I; GAF domain containing protein | 0.50 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | low | > 60 |
| Escherichia coli BW25113 | 0.39 | b2829 | ptsP | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | 0.50 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF1311 | | FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated | 0.50 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Pantoea sp. MT58 | 0.38 | IAI47_03920 | | phosphoenolpyruvate--protein phosphotransferase | 0.50 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 76 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_2904 | | phosphoenolpyruvate-protein phosphotransferase | 0.51 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_03692 | | Phosphoenolpyruvate-dependent phosphotransferase system | 0.51 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS04950 | | phosphoenolpyruvate--protein phosphotransferase | 0.51 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 74 |
| Dickeya dianthicola 67-19 | 0.38 | HGI48_RS04960 | | phosphoenolpyruvate--protein phosphotransferase | 0.49 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 71 |
| Dickeya dianthicola ME23 | 0.38 | DZA65_RS05300 | | phosphoenolpyruvate--protein phosphotransferase | 0.49 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.37 | HER17_RS16580 | | phosphoenolpyruvate--protein phosphotransferase | 0.53 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
Not shown: 17 genomes with orthologs for PP_5145 only; 16 genomes with orthologs for PP_0789 only