Conservation of cofitness between PFLU_RS07240 and PFLU_RS23595 in Pseudomonas fluorescens SBW25

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.52 18
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.99 PS417_21990 LacI family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_17635 RNA polymerase subunit sigma 0.92 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.89 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.89 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.90 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.89 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.89 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas putida KT2440 0.61 PP_1429 Sigma factor AlgU regulatory protein MucB 0.60 PP_3415 Transcriptional regulator, LacI family low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.65 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.65 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas stutzeri RCH2 0.51 Psest_3098 Negative regulator of sigma E activity 0.48 Psest_2126 Transcriptional regulators — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3341 Sigma factor RpoE negative regulatory protein RseB precursor 0.54 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor low > 90
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS14395 sugar dehydratase 0.43 BPHYT_RS00410 LacI family transcription regulator low > 109
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_12475 sigma-E factor regulatory protein RseB 0.33 CSW01_01485 transcriptional regulator — —
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.29 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09635 transcriptional regulator 0.40 HSERO_RS05460 LacI family transcription regulator low > 78
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.31 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.32 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.32 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.29 GFF952 Positive regulator of L-idonate catabolism low > 78
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.53 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor — —
Enterobacter sp. TBS_079 0.13 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.30 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.29 BWI76_RS26245 transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.29 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.31 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Escherichia coli ECRC62 0.13 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.29 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.83 26
Escherichia coli BL21 0.13 ECD_02465 anti-sigma E factor, binds RseA 0.28 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli ECRC99 0.13 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.29 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC102 0.13 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.29 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli BW25113 0.13 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.29 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli ECRC100 0.13 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.29 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.29 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 73
Escherichia fergusonii Becca 0.13 EFB2_01325 Sigma-E factor regulatory protein RseB 0.29 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli ECRC101 0.13 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.29 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECOR38 0.13 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.29 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC98 0.13 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.29 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 86
Escherichia coli ECOR27 0.13 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.29 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli Nissle 1917 0.13 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.29 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Erwinia tracheiphila SCR3 0.13 LU632_RS15415 rseB sigma-E factor regulatory protein RseB 0.30 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 74
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.31 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Variovorax sp. OAS795 0.12 ABID97_RS08340 MucB/RseB C-terminal domain-containing protein 0.26 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.29 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Castellaniella sp019104865 MT123 0.12 ABCV34_RS08345 MucB/RseB C-terminal domain-containing protein 0.54 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator low > 48
Variovorax sp. SCN45 0.12 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.29 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor low > 127

Not shown: 15 genomes with orthologs for PFLU_RS07240 only; 8 genomes with orthologs for PFLU_RS23595 only